{"id":"W3158704474","doi":"10.1128/msphere.00011-21","title":"Temporal Dynamics and Evolution of SARS-CoV-2 Demonstrate the Necessity of Ongoing Viral Genome Sequencing in Ontario, Canada","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hospital for Sick Children; Health Sciences North; University Health Network; Mount Sinai Hospital; Kingston Health Sciences Centre; University of Ottawa; Queen's University; Ontario Genomics; Agricultural Research Institute of Ontario; Sunnybrook Health Science Centre; Public Health Ontario; Ontario Institute for Cancer Research; University of Toronto; McMaster University","funders":"Dalhousie University; Sunnybrook Research Institute; McMaster University","keywords":"Genome; Biology; Transmission (telecommunications); Mutation rate; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Evolutionary biology; Genetics; Mutation; Population; Genetic variation; Coronavirus; Transmission rate; Virology; Disease; Infectious disease (medical specialty); Gene; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001473244,0.0001185938,0.0001209602,0.0004860587,0.000828621,0.0005904878,0.0002516465,0.0001443167,0.001904887],"category_scores_gemma":[0.0005982968,0.0001138506,0.0001601868,0.0008045722,0.0002748221,0.0002277185,0.0002783675,0.0002643298,0.0001582102],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01139481,"about_ca_system_score_gemma":0.01209361,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9810395,"about_ca_topic_score_gemma":0.9924691,"domain_scores_codex":[0.9998185,0.00000950957,0.000005769133,0.00003292193,0.00007219643,0.00006115258],"domain_scores_gemma":[0.9993814,0.00003192941,0.0001398066,0.00001661846,0.0003247923,0.0001054154],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002646188,0.00003030979,0.956331,0.00006469081,0.00005892317,0.0003407866,0.002370161,0.0008351959,0.01478938,0.0006644588,0.002915982,0.0213346],"study_design_scores_gemma":[0.000002838901,0.00001150376,0.995339,0.000008830007,0.000008121127,0.00003738313,0.0006442176,0.0004993679,0.0003727201,0.00003235691,0.003039336,0.000004247234],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9882217,0.0005843107,0.0005380728,0.0004751826,0.00001123829,0.00002226022,0.003205016,0.00001960535,0.006922578],"genre_scores_gemma":[0.9953199,0.0003356655,0.0004246885,0.00006757934,0.00000311788,0.000006395328,0.001073754,0.000005684456,0.00276328],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01896048,"threshold_uncertainty_score":0.08267558,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03046642628335088,"score_gpt":0.2838425204099801,"score_spread":0.2533760941266292,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}