{"id":"W3158715374","doi":"10.1164/ajrccm-conference.2021.203.1_meetingabstracts.a1217","title":"Multi ‘Omics Profiling of HIV-Associated COPD: Integration of the Airway Epithelial Microbiome, Transcriptome and Methylome","year":2021,"lang":"en","type":"article","venue":"","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Transcriptome; Microbiome; Profiling (computer programming); COPD; Omics; Computational biology; Metagenomics; Biology; Human immunodeficiency virus (HIV); Bioinformatics; Computer science; Medicine; Genetics; Gene; Immunology; Gene expression; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006005684,0.0003822887,0.000679116,0.001126786,0.0004682026,0.001300053,0.0002443017,0.0005730871,0.001257984],"category_scores_gemma":[0.0006136368,0.0002083607,0.0006345009,0.001108111,0.0002024741,0.0004798869,0.0008387671,0.0005649027,0.0003533726],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003027476,"about_ca_system_score_gemma":0.0004332192,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001948816,"about_ca_topic_score_gemma":0.004367376,"domain_scores_codex":[0.9994971,0.0000843385,0.00004362982,0.0001573975,0.0001324086,0.00008525115],"domain_scores_gemma":[0.9997566,0.00006206078,0.00005798487,0.0000302128,0.00006428778,0.00002883998],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009348964,0.00009651892,0.1447384,0.0008583158,0.0009906463,0.0003625567,0.0003736431,0.001033086,0.8050198,0.0004136288,0.002073762,0.04310483],"study_design_scores_gemma":[0.00003287366,0.000432646,0.8416597,0.0002640406,0.0007927491,0.001418933,0.0009731086,0.008972852,0.1259637,0.001662353,0.01775418,0.00007306832],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9480613,0.01245478,0.01059062,0.001260572,0.0001750918,0.00007104151,0.02399408,0.0002454283,0.003147139],"genre_scores_gemma":[0.9631793,0.003810027,0.01437794,0.001093636,0.0001148591,0.00008988799,0.0150369,0.00006017346,0.002237333],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001948816,"threshold_uncertainty_score":0.004208386,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01814284502718475,"score_gpt":0.2607217029527977,"score_spread":0.2425788579256129,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}