{"id":"W3158788766","doi":"10.1101/2021.05.06.442968","title":"A simple hierarchical model for heterogeneity in the evolutionary correlation on a phylogenetic tree","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Phylogenetic tree; Phylogenetic comparative methods; Clade; Phylogenetics; Tree (set theory); Evolutionary biology; Biology; Simple (philosophy); Correlation; Tree rearrangement; Mathematics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009078802,0.0006378331,0.001501439,0.002028562,0.001261045,0.002136641,0.004297137,0.002514049,0.005424988],"category_scores_gemma":[0.02000651,0.001028627,0.00209628,0.002039351,0.002057183,0.003100123,0.001515024,0.002289766,0.0007359795],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002589946,"about_ca_system_score_gemma":0.001134327,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0181893,"about_ca_topic_score_gemma":0.01563944,"domain_scores_codex":[0.9976661,0.001144479,0.00008704776,0.0007420072,0.0001566944,0.0002035506],"domain_scores_gemma":[0.987973,0.008934733,0.001126235,0.001004413,0.0004921722,0.0004694115],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001735191,0.00008943352,0.01610814,0.00007669918,0.0001613287,0.0002458752,0.0003719241,0.9264456,0.00164464,0.04340175,0.001403988,0.009877129],"study_design_scores_gemma":[0.00002901799,0.00002452195,0.001852591,0.000007116951,0.00001686168,0.00003354077,0.0000197701,0.9861984,0.0000627899,0.01156115,0.0001773365,0.00001692764],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.5381783,0.0002450822,0.4560835,0.00119625,0.00004563854,0.0001883412,0.001335959,0.0008310207,0.001895885],"genre_scores_gemma":[0.9458382,0.0001093444,0.04973293,0.0001905405,0.00005850866,0.000272883,0.0007700862,0.0001643436,0.002863091],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.0181893,"threshold_uncertainty_score":0.04801387,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03078951701943826,"score_gpt":0.2393938619364855,"score_spread":0.2086043449170473,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}