{"id":"W3159168726","doi":"10.21769/bioprotoc.4011","title":"Identification of R-loop-forming Sequences in Drosophila melanogaster Embryos and Tissue Culture Cells Using DRIP-seq","year":2021,"lang":"en","type":"article","venue":"BIO-PROTOCOL","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Université de Montréal; Montreal Clinical Research Institute","funders":"","keywords":"Biology; Drosophila melanogaster; Nucleic acid; Computational biology; Model organism; DNA; Genome instability; Genetics; Cell biology; Gene; DNA damage","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003207114,0.0003897495,0.000316123,0.0006733728,0.0003535995,0.0004661208,0.0004436006,0.0005358408,0.004855177],"category_scores_gemma":[0.0003199186,0.0003557302,0.0003858629,0.0003800176,0.0002066505,0.0002397454,0.0003010509,0.0008251879,0.003922799],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003897474,"about_ca_system_score_gemma":0.0003630575,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001943398,"about_ca_topic_score_gemma":0.005177593,"domain_scores_codex":[0.9998394,0.00001194249,0.00001104487,0.00006677461,0.0000533848,0.00001733197],"domain_scores_gemma":[0.9998666,0.00004333525,0.00002472055,0.00001673911,0.00003175256,0.00001690037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007532139,0.00001060641,0.0005357493,0.0002418117,0.00001206995,0.000146603,0.00006548256,0.0005656458,0.9847777,0.0004601122,0.003226417,0.009882492],"study_design_scores_gemma":[0.00003297573,0.0001299547,0.007351907,0.00008126512,0.00003415063,0.0004063274,0.0001016778,0.006701215,0.9385746,0.0005064572,0.0460359,0.00004352485],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.4597061,0.005817764,0.359656,0.001677803,0.0005888448,0.001454865,0.1242364,0.01205989,0.03480228],"genre_scores_gemma":[0.3145096,0.005853752,0.5578822,0.001345881,0.00007400795,0.001705341,0.08903626,0.002247692,0.0273453],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.004855177,"threshold_uncertainty_score":0.01624221,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01256947145078664,"score_gpt":0.2871396769923567,"score_spread":0.27457020554157,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}