{"id":"W3159653368","doi":"10.3168/jds.2020-19879","title":"Genome-wide association study between copy number variants and hoof health traits in Holstein dairy cattle","year":2021,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; University of Guelph","funders":"Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; Agricultural Research Service; Genome Canada; Ontario Genomics; Ministry of Agriculture, Food and Rural Affairs; University of Guelph; Aarhus Universitet; Genome Alberta; U.S. Department of Agriculture","keywords":"Hoof; Biology; Genome-wide association study; Candidate gene; Genetics; Lameness; Dairy cattle; Claw; Genetic association; Copy-number variation; SNP array; SNP; Genome; Gene; Genotype; Single-nucleotide polymorphism; Medicine; Anatomy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006961749,0.0001917049,0.0003041182,0.001216086,0.0003477078,0.0004321502,0.0002846183,0.0002863783,0.0009444386],"category_scores_gemma":[0.0008141866,0.0001099116,0.0003661238,0.001049702,0.000269592,0.0001418631,0.0002132477,0.0002441357,0.00006206251],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005352782,"about_ca_system_score_gemma":0.000270147,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01950114,"about_ca_topic_score_gemma":0.03158334,"domain_scores_codex":[0.9994816,0.00009567435,0.0000294126,0.0001929296,0.0001056857,0.00009464524],"domain_scores_gemma":[0.9994053,0.0002650008,0.0001484712,0.00004109812,0.00005682531,0.00008340091],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000542472,0.00004481825,0.9747045,0.00002471273,0.0004041031,0.0004318586,0.0002084989,0.0002626542,0.01617636,0.00007429656,0.00007923677,0.007046605],"study_design_scores_gemma":[0.000006961327,0.00004055837,0.9988427,0.000002732469,0.00007139754,0.0001273302,0.00004961152,0.00047357,0.0002282739,0.00001875138,0.0001351689,0.000002899797],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999339,0.0001742479,0.0002183096,0.00001096232,0.000001478586,0.000002385669,0.0001412493,0.000003530427,0.0001088627],"genre_scores_gemma":[0.9989497,0.00008880453,0.0004259387,0.00001069598,0.000003451084,0.000004119176,0.00031748,0.00000315279,0.0001965766],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01950114,"threshold_uncertainty_score":0.03877527,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01623644796229989,"score_gpt":0.2861616856358124,"score_spread":0.2699252376735125,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}