{"id":"W3159667640","doi":"10.1186/s12864-021-07644-9","title":"Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response","year":2021,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Institute of Food and Agriculture; Universiti Putra Malaysia; U.S. Department of Agriculture; U.S. Department of Education","keywords":"Biology; Ganoderma; Transcriptome; Host (biology); Elaeis guineensis; Botany; Pathogen; Fungus; Lignin; Gene; Microbiology; Palm oil; Gene expression; Genetics; Food science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008822078,0.0003084733,0.0002707586,0.0003637277,0.0002065252,0.0003455972,0.00008522037,0.0002175071,0.0007959969],"category_scores_gemma":[0.0001444986,0.00008225286,0.0003349562,0.0003347101,0.0001139723,0.0001830499,0.0002004264,0.0003311722,0.0002982336],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00016647,"about_ca_system_score_gemma":0.0001846556,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006979809,"about_ca_topic_score_gemma":0.001071003,"domain_scores_codex":[0.9998778,0.000006560919,0.000007142843,0.00004344378,0.00003408726,0.00003096741],"domain_scores_gemma":[0.9998903,0.00002138016,0.00003206856,0.000007212877,0.000026924,0.00002201236],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001480503,0.00002395736,0.005549204,0.000102677,0.000008033677,0.00008468459,0.0000549404,0.00005774922,0.9918259,0.00002024825,0.0000545183,0.002069999],"study_design_scores_gemma":[0.00001059606,0.0004766468,0.5606499,0.00006632721,0.000102009,0.001410917,0.0006980774,0.002611576,0.4269715,0.0001962076,0.006781514,0.00002467641],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909826,0.001523159,0.001276002,0.00009488052,0.00002404122,0.00002151973,0.004921583,0.00007105883,0.00108515],"genre_scores_gemma":[0.9854756,0.001078516,0.0019523,0.00009580557,0.00002049154,0.00004702738,0.009067485,0.00002535394,0.002237466],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007959969,"threshold_uncertainty_score":0.002662838,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02025114555753244,"score_gpt":0.2162271274011792,"score_spread":0.1959759818436468,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}