{"id":"W3159728495","doi":"10.1038/s41586-021-03451-0","title":"Towards complete and error-free genome assemblies of all vertebrate species","year":2021,"lang":"en","type":"article","venue":"Nature","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3098,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum","funders":"National Institute on Deafness and Other Communication Disorders; Agencia Estatal de Investigación; National Key Research and Development Program of China; Australian Research Council; Wellcome Trust; Danmarks Grundforskningsfond; Biotechnology and Biological Sciences Research Council; National Institutes of Health; Max-Planck-Gesellschaft; Generalitat de Catalunya; Bundesministerium für Bildung und Forschung; National Institute of General Medical Sciences; Centres de Recerca de Catalunya; Monash University; Biomedical Research Council; Hessisches Ministerium für Wissenschaft und Kunst; National Research Foundation; Irish Research Council; European Commission; European Molecular Biology Laboratory; Oxford Nanopore Technologies; National Human Genome Research Institute; Villum Fonden; Monash University Malaysia; National Science Foundation","keywords":"Vertebrate; Genome; Evolutionary biology; Biology; Computational biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009354798,0.001783844,0.001663316,0.003048812,0.00181076,0.004036521,0.003209368,0.003136225,0.003314829],"category_scores_gemma":[0.01607937,0.001564459,0.001806384,0.00245864,0.001009867,0.003590165,0.003252431,0.003845965,0.005754073],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00151213,"about_ca_system_score_gemma":0.002364259,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002396906,"about_ca_topic_score_gemma":0.004154016,"domain_scores_codex":[0.9962053,0.001062999,0.0004190046,0.0009139822,0.001173965,0.0002249286],"domain_scores_gemma":[0.9882974,0.001670598,0.001301368,0.002513403,0.005705712,0.0005114779],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005526622,0.0001670895,0.01123656,0.003288396,0.0006488059,0.0008818245,0.001717262,0.02328448,0.6823216,0.01466381,0.03301649,0.228221],"study_design_scores_gemma":[0.0001590308,0.0006918653,0.02706217,0.001698366,0.001176847,0.002647642,0.0007508225,0.08285653,0.504811,0.03030848,0.3475066,0.0003306108],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.05728141,0.01088445,0.9053773,0.001909188,0.001253298,0.0003294699,0.0105668,0.008603457,0.003794496],"genre_scores_gemma":[0.04364044,0.002651472,0.9305248,0.0004438324,0.0001437979,0.0001913978,0.01916123,0.001396345,0.001846642],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.009354798,"threshold_uncertainty_score":0.04947352,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01852398915718846,"score_gpt":0.2506751581068544,"score_spread":0.2321511689496659,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}