{"id":"W3159803549","doi":"10.1128/mra.00249-21","title":"Draft Genome Assemblies of Two Campylobacter novaezeelandiae and Four Unclassified Thermophilic <i>Campylobacter</i> Isolates from Canadian Agricultural Surface Water","year":2021,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Campylobacter; Campylobacter jejuni; Biology; Clade; Genome; Campylobacter coli; Thermophile; Microbiology; Phylogenetic tree; Genetics; Veterinary medicine; Bacteria; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003487126,0.0004488264,0.0007282287,0.00003323474,0.0003235651,0.00008452211,0.0004405692,0.0003955374,0.0008660156],"category_scores_gemma":[0.00003811846,0.0001840731,0.000175693,0.0002741741,0.0002741411,0.0001252351,0.0002956451,0.0002887692,0.000119896],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009589737,"about_ca_system_score_gemma":0.00004347395,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.01258242,"about_ca_topic_score_gemma":0.04518797,"domain_scores_codex":[0.9969186,0.0004977018,0.0006319114,0.0008532036,0.00009286508,0.001005694],"domain_scores_gemma":[0.9988028,0.000277339,0.000202009,0.000216263,0.0002181179,0.0002834467],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004336005,0.00005175644,0.1313034,0.000006673105,0.0001667764,0.0000242364,0.0003285514,0.000005850282,0.8670844,0.00001318972,0.0006465247,0.0003252854],"study_design_scores_gemma":[0.001596205,0.0004176226,0.4166298,0.00008151487,0.0001675174,0.000355681,0.001986715,0.000008670161,0.051381,0.0003226038,0.5258946,0.001158118],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920418,0.0009679391,0.000001275759,0.002493281,0.0002139765,0.0002454361,0.003077118,0.00004637986,0.0009128251],"genre_scores_gemma":[0.9845675,0.0001373644,0.00006600105,0.001876712,0.0002396386,0.000009902035,0.01202488,0.000005279592,0.001072693],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8157034,"threshold_uncertainty_score":0.9939929,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01820646985232259,"score_gpt":0.207379108349717,"score_spread":0.1891726384973944,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}