{"id":"W3160306275","doi":"10.1101/2021.05.20.444921","title":"Analysis of viromes and microbiomes from pig fecal samples reveals that phages and prophages are not vectors of antibiotic resistance genes","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Fonds de recherche du Québec – Nature et technologies; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","keywords":"Prophage; Biology; Genome; Genetics; Microbiome; Bacteriophage; Bacterial virus; Human virome; Viral evolution; Antibiotic resistance; Feces; Bacterial genome size; Gene; Microbiology; Virology; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005728023,0.0005374052,0.0005377085,0.001650012,0.0006405373,0.00100897,0.0001627083,0.000557525,0.001878615],"category_scores_gemma":[0.0009152234,0.0002177816,0.0006029759,0.001604198,0.0003545058,0.0003801019,0.0008140252,0.0004343128,0.00105789],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001713196,"about_ca_system_score_gemma":0.0003669655,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001275928,"about_ca_topic_score_gemma":0.001702435,"domain_scores_codex":[0.999549,0.00004651517,0.00002366929,0.000174171,0.0001072037,0.00009941755],"domain_scores_gemma":[0.9996139,0.0001201127,0.00007531159,0.00005154633,0.00006961864,0.00006957835],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009214922,0.0001094617,0.1504238,0.0008402265,0.0002619145,0.0003602912,0.0005920652,0.001157753,0.7972677,0.0004800331,0.003064377,0.04452081],"study_design_scores_gemma":[0.00003130221,0.000289074,0.8971098,0.0001756251,0.0001784439,0.001017305,0.0008813258,0.006094978,0.06260695,0.00154143,0.03001052,0.00006333699],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.952007,0.001687678,0.009206668,0.000157571,0.00006818301,0.00003609209,0.03383353,0.0003492973,0.002653925],"genre_scores_gemma":[0.8452251,0.001366582,0.02776082,0.0002419492,0.00006304337,0.0001053194,0.1214768,0.0003634749,0.003396904],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001878615,"threshold_uncertainty_score":0.006284595,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01528137958067684,"score_gpt":0.2156649144556714,"score_spread":0.2003835348749946,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}