{"id":"W3160542697","doi":"10.1038/s41598-021-89091-w","title":"Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus","year":2021,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Date Palm Research Studies","field":"Agricultural and Biological Sciences","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Georgia Advanced Computing Resource Center, University of Georgia; University of Georgia Research Foundation; United Arab Emirates University; King Abdulaziz City for Science and Technology; York University; New York University Abu Dhabi; Hainan University; University of Georgia","keywords":"Rhynchophorus; Weevil; Biology; Sequence assembly; Haplotype; Genome; De novo transcriptome assembly; Genetics; Gene; Genomics; Transcriptome; Evolutionary biology; Computational biology; Botany; Genotype","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["scholarly_communication"],"consensus_categories":[],"category_scores_codex":[0.002476883,0.0001937033,0.0002659445,0.00003793493,0.0006708424,0.001150578,0.0004601704,0.00006809054,0.0002118004],"category_scores_gemma":[0.000744673,0.00006600075,0.0001488361,0.001545784,0.0002614573,0.0003078292,0.0004032451,0.0002052724,0.00004476621],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005604656,"about_ca_system_score_gemma":0.00008177189,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002965899,"about_ca_topic_score_gemma":0.002455597,"domain_scores_codex":[0.9966562,0.0002668001,0.0004916089,0.0009608838,0.0009635238,0.0006609348],"domain_scores_gemma":[0.9988461,0.0002316724,0.0001575423,0.0004443283,0.000216281,0.0001040599],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001069063,0.0001569299,0.009773145,0.00001016011,0.00001909689,0.002444766,0.000183506,0.00001951949,0.974713,0.00003043201,0.009058819,0.003579879],"study_design_scores_gemma":[0.0001553855,0.00008762255,0.55502,0.00004654072,0.00002077441,0.0003816487,0.001811724,0.00003225297,0.05662367,0.004012474,0.3813695,0.0004384352],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9889603,0.001990415,0.000002955459,0.003632926,0.001364615,0.0003346727,0.00002589358,0.00004697296,0.003641281],"genre_scores_gemma":[0.9919822,0.0001878942,0.0000573683,0.0001212442,0.0001996865,0.00006393341,0.0003296214,0.000001930253,0.007056103],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9180894,"threshold_uncertainty_score":0.9998863,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03135045994223078,"score_gpt":0.2520453638593649,"score_spread":0.2206949039171341,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}