{"id":"W3160628575","doi":"10.1128/mbio.00985-21","title":"Genomic Analysis of the Yet-Uncultured Binatota Reveals Broad Methylotrophic, Alkane-Degradation, and Pigment Production Capacities","year":2021,"lang":"en","type":"article","venue":"mBio","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; U.S. Forest Service; Joint Genome Institute; Arizona State University; Office of Science; National Aeronautics and Space Administration; U.S. Department of Energy; Parks Canada; National Science Foundation","keywords":"Phylum; Biology; Genome; Evolutionary biology; Ecosystem; Range (aeronautics); Computational biology; Gene; Ecology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008467407,0.0004295766,0.0003289871,0.001061554,0.000581674,0.0007389043,0.000177335,0.0003249039,0.002060829],"category_scores_gemma":[0.0003316866,0.0002130581,0.0003966947,0.001066757,0.0002209467,0.0003652255,0.001039365,0.0003675708,0.0008065065],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001873058,"about_ca_system_score_gemma":0.0002594648,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002189511,"about_ca_topic_score_gemma":0.003944091,"domain_scores_codex":[0.999881,0.000007522629,0.000009365734,0.00005222232,0.0000265876,0.00002325448],"domain_scores_gemma":[0.9996923,0.00005202771,0.00007097767,0.00003574452,0.0000490801,0.00009982954],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003102979,0.00003932606,0.01622404,0.0001444707,0.00002325113,0.0001207501,0.0001949201,0.00008323739,0.9758186,0.00008616381,0.00005829801,0.00689659],"study_design_scores_gemma":[0.00003321203,0.0004689567,0.8454408,0.0000992374,0.0002087459,0.002572368,0.001439037,0.001989903,0.129975,0.0003581182,0.017352,0.00006259959],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9902209,0.0005126966,0.001454671,0.00006215203,0.00001900605,0.00003057304,0.005313335,0.00007110967,0.0023156],"genre_scores_gemma":[0.9786155,0.0004444965,0.004871373,0.0001161938,0.000008817874,0.00006939434,0.01288679,0.00005561388,0.002931726],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002189511,"threshold_uncertainty_score":0.006894171,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01076274867966235,"score_gpt":0.2108600985857567,"score_spread":0.2000973499060944,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}