{"id":"W3161108411","doi":"10.1016/j.xpro.2021.100536","title":"Generation, maintenance, and monitoring of gnotobiotic mice","year":2021,"lang":"en","type":"article","venue":"STAR Protocols","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Health Services","keywords":"Biology; Sterility; 16S ribosomal RNA; Bacteria; Gram staining; Staining; Microbiology; Computational biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002391479,0.001434731,0.00111516,0.003200056,0.001378753,0.001217188,0.002189365,0.00256801,0.01323097],"category_scores_gemma":[0.001238877,0.001596824,0.001303527,0.0009770059,0.001070448,0.001156269,0.001377699,0.004562177,0.007512426],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009249988,"about_ca_system_score_gemma":0.001038822,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009352752,"about_ca_topic_score_gemma":0.002667848,"domain_scores_codex":[0.9981359,0.0003231632,0.0002301257,0.0004930915,0.0005570957,0.0002605418],"domain_scores_gemma":[0.9981723,0.0002006157,0.0003387762,0.0004348747,0.000286342,0.0005671248],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002122133,0.0006425286,0.00123355,0.0004399563,0.00007249205,0.000442072,0.0003058758,0.0003924143,0.9711915,0.004478191,0.004719767,0.01395959],"study_design_scores_gemma":[0.0007422327,0.002760518,0.01203094,0.000569893,0.0002620618,0.002090329,0.0002657372,0.002453973,0.8463572,0.002291231,0.130011,0.0001649257],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.5056433,0.007618431,0.348608,0.002969044,0.002282223,0.01656266,0.0667171,0.009804116,0.0397952],"genre_scores_gemma":[0.3704704,0.01398981,0.3430914,0.004056119,0.0004439562,0.0376255,0.0781114,0.00459755,0.1476138],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.01323097,"threshold_uncertainty_score":0.04426205,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03384115952221202,"score_gpt":0.3258377230621914,"score_spread":0.2919965635399794,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}