{"id":"W3161178124","doi":"10.3390/microorganisms9051035","title":"Molecular Analysis of SARS-CoV-2 Circulating in Bangladesh during 2020 Revealed Lineage Diversity and Potential Mutations","year":2021,"lang":"en","type":"article","venue":"Microorganisms","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Clade; Lineage (genetic); Phylogenetic tree; Biology; Genetic diversity; Mutation; Phylogenetics; Virus; Evolutionary biology; Genetics; Mutation rate; Virology; Zoology; Gene; Medicine; Population","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001815337,0.0001265651,0.00041014,0.0003445203,0.0001766648,0.00002257566,0.00009439497,0.0001029304,0.00002060159],"category_scores_gemma":[0.0001698028,0.0001409541,0.0001566901,0.001596814,0.00007798166,0.00006047572,0.0004526259,0.0002162186,0.000005422213],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009289464,"about_ca_system_score_gemma":0.0001049525,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002935074,"about_ca_topic_score_gemma":0.0001077666,"domain_scores_codex":[0.9987245,0.00008206959,0.0003015534,0.0003608264,0.0002850451,0.0002460062],"domain_scores_gemma":[0.9993913,0.00004086711,0.00007405629,0.0002720168,0.0001935204,0.00002831005],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003254217,0.00008860579,0.1770996,0.0001001771,0.0003609704,0.001654976,0.001065978,0.00001519279,0.8194973,0.000007223443,0.000004876519,0.00007249598],"study_design_scores_gemma":[0.001186944,0.00002244731,0.1765907,0.00003843122,0.0005556848,0.00006712016,0.0003151315,0.0007336897,0.8203363,0.00001996835,0.00003379993,0.00009975083],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985525,0.0003177818,0.0005951644,0.0001918102,0.00002455116,0.0001536272,0.00001968477,0.00002393459,0.0001209264],"genre_scores_gemma":[0.9973211,0.000004598855,0.0005918106,0.001994302,0.00002753018,0.000002508466,0.00002748379,0.00001547583,0.00001515709],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001802492,"threshold_uncertainty_score":0.574794,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02332941949311637,"score_gpt":0.3001845657347855,"score_spread":0.2768551462416691,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}