{"id":"W3161419817","doi":"10.1101/2021.05.20.444551","title":"Weaning age and its effect on the development of the swine gut microbiome and resistome","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agricultural Research Service; Alberta Agriculture and Forestry; U.S. Department of Agriculture","keywords":"Weaning; Faecalibacterium prausnitzii; Biology; Prevotella; Metagenomics; Microbiome; Feces; Resistome; Bifidobacterium; Bacteroides; Animal science; Microbiology; Physiology; Veterinary medicine; Antibiotics; Antibiotic resistance; Lactobacillus; Bacteria; Gene; Bioinformatics; Genetics; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004070144,0.0002072616,0.0002539367,0.0002710799,0.0001924347,0.0004548953,0.0001300749,0.000325936,0.002319538],"category_scores_gemma":[0.000422492,0.0001604783,0.000297641,0.0001531405,0.000178654,0.0003051659,0.0003815744,0.0005255107,0.0002933631],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002528363,"about_ca_system_score_gemma":0.0001995023,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006432422,"about_ca_topic_score_gemma":0.001254563,"domain_scores_codex":[0.9997687,0.00003330053,0.00001796631,0.00008258184,0.00003768036,0.00005979189],"domain_scores_gemma":[0.9995406,0.00008099405,0.0001599377,0.00002822529,0.00005997697,0.000130374],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002813403,0.0002636768,0.3169776,0.0001152152,0.000120858,0.0004774745,0.0002835371,0.00008822419,0.6676224,0.0000868487,0.0003847474,0.01076589],"study_design_scores_gemma":[0.000004927977,0.0006350609,0.9923629,0.00001032271,0.00002038316,0.0001018744,0.0001779995,0.00007796724,0.005976425,0.00002475704,0.0006010443,0.000006315036],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988668,0.0003309961,0.0001689647,0.00003157651,0.00001503773,0.000006634993,0.0003275214,0.000005210931,0.0002473424],"genre_scores_gemma":[0.9974192,0.0002495278,0.000265543,0.0001126243,0.000009416291,0.00002590914,0.0007792537,0.000008501775,0.00113004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002319538,"threshold_uncertainty_score":0.007759631,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01091641339432906,"score_gpt":0.2207804969266961,"score_spread":0.209864083532367,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}