{"id":"W3161912777","doi":"10.1101/2021.05.20.445037","title":"A cellular and molecular portrait of endometriosis subtypes","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Endometriosis Research and Treatment","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver General Hospital; University of British Columbia; University of British Columbia Hospital","funders":"National Center for Advancing Translational Sciences; Clinical and Translational Science Institute, University of California, Los Angeles; Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; BC Cancer Foundation; National Institutes of Health; Michael Smith Health Research BC; Ovarian Cancer Research Alliance; Cedars-Sinai Medical Center","keywords":"Endometriosis; Stromal cell; Endometrium; Downregulation and upregulation; Cancer research; ARID1A; Stroma; Biology; Epithelium; Pathology; Medicine; Immunohistochemistry; Endocrinology; Mutation; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001569851,0.00008522109,0.0001722158,0.0006109751,0.0001816367,0.0004128564,0.00009452867,0.0001653517,0.0007189706],"category_scores_gemma":[0.0002178539,0.00009881576,0.0001443193,0.000536259,0.0001273612,0.0001322443,0.0002607633,0.0001554713,0.000244091],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008612334,"about_ca_system_score_gemma":0.00006915249,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003948142,"about_ca_topic_score_gemma":0.0005946071,"domain_scores_codex":[0.9998894,0.0000156816,0.000007596486,0.00003486834,0.00002721559,0.00002528265],"domain_scores_gemma":[0.9999009,0.00002100432,0.0000298459,0.00001583362,0.00001729067,0.00001512628],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003720616,0.00002201166,0.1823253,0.0001521343,0.0000744246,0.0003370557,0.0004654249,0.0003123082,0.796192,0.0002977083,0.0006131173,0.01883636],"study_design_scores_gemma":[0.0000106888,0.000147874,0.9408644,0.00003450219,0.00005605013,0.003479024,0.00102304,0.001516555,0.0435293,0.0006213013,0.008705278,0.00001194178],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956034,0.001053603,0.0008536023,0.00005311109,0.000004848567,0.000008943542,0.001235118,0.00001543099,0.001171875],"genre_scores_gemma":[0.9948629,0.0006907277,0.00119837,0.00005975848,0.00001233814,0.00002129485,0.002385708,0.00001086298,0.0007581025],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007189706,"threshold_uncertainty_score":0.002405226,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01432561899448328,"score_gpt":0.2431543490984324,"score_spread":0.2288287301039491,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}