{"id":"W3163629225","doi":"10.1080/19490976.2021.1918993","title":"Bioactive small molecules produced by the human gut microbiome modulate <i>Vibrio cholerae</i> sessile and planktonic lifestyles","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Biology; Metabolome; Vibrio cholerae; Microbiology; Transcriptome; Bacteroides thetaiotaomicron; Human microbiome; Gut flora; Microbiome; Bacteroides; Phenotype; Motility; Pathogen; Bacteria; Gene; Genetics; Metabolomics; Gene expression; Immunology; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001765919,0.0003490919,0.0002916191,0.00004554001,0.0004447362,0.0001515481,0.000298285,0.0002411208,0.00002736456],"category_scores_gemma":[0.00002788761,0.0002872577,0.0001178359,0.0001463797,0.0002612078,0.000008765133,0.000328601,0.0002372774,0.000024706],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002896105,"about_ca_system_score_gemma":0.0001944809,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001703255,"about_ca_topic_score_gemma":0.0002412227,"domain_scores_codex":[0.9980786,0.0001597022,0.0003244184,0.0008211064,0.00007432427,0.0005418218],"domain_scores_gemma":[0.9989381,0.00001742787,0.0001427478,0.0006395314,0.0001368043,0.0001253404],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002177392,0.00011559,0.0009291244,0.00006713867,0.000108894,0.000009535565,0.0002108683,0.00000487802,0.9824492,0.00004232935,0.01563974,0.0004009088],"study_design_scores_gemma":[0.0007017343,0.0001036336,0.00563392,0.00005145372,0.0000446512,0.0002322209,0.0001367561,0.000004242747,0.8932346,0.00002683298,0.09946129,0.0003687168],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9852476,0.01210921,0.00007482894,0.00149023,0.0001455129,0.0003250181,0.0003388741,0.0000323678,0.000236402],"genre_scores_gemma":[0.9915333,0.001071703,0.0007397239,0.002097313,0.000268132,0.00002875162,0.001021198,0.00006721844,0.0031727],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08921467,"threshold_uncertainty_score":0.999958,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009573469745391623,"score_gpt":0.2386706214814386,"score_spread":0.2290971517360469,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}