{"id":"W3163629225","doi":"10.1080/19490976.2021.1918993","title":"Bioactive small molecules produced by the human gut microbiome modulate <i>Vibrio cholerae</i> sessile and planktonic lifestyles","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Biology; Metabolome; Vibrio cholerae; Microbiology; Transcriptome; Bacteroides thetaiotaomicron; Human microbiome; Gut flora; Microbiome; Bacteroides; Phenotype; Motility; Pathogen; Bacteria; Gene; Genetics; Metabolomics; Gene expression; Immunology; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001029496,0.0002340644,0.0002147079,0.0001794752,0.0001132871,0.0003416831,0.00005017577,0.0001932627,0.002039814],"category_scores_gemma":[0.0002475508,0.00009387767,0.0001629717,0.0001179831,0.0001532546,0.0001012038,0.000165118,0.0002002432,0.0002889616],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001135426,"about_ca_system_score_gemma":0.0001406391,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008776034,"about_ca_topic_score_gemma":0.001217138,"domain_scores_codex":[0.9999225,0.00001708174,0.000003821658,0.00001666861,0.00001380236,0.00002611131],"domain_scores_gemma":[0.9999368,0.00001493545,0.00001422331,0.000004168036,0.00001092207,0.00001886323],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007603044,0.00003553365,0.002850087,0.00009624474,0.00002135492,0.00004497129,0.00005112203,0.00005674537,0.9906741,0.00003221137,0.00008720782,0.0052901],"study_design_scores_gemma":[0.0001038067,0.003824927,0.2837547,0.00006289448,0.0001549213,0.0002681785,0.0008624569,0.0007283948,0.7053839,0.0003040368,0.004526298,0.00002554409],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951623,0.002500095,0.0005776408,0.0001309961,0.00003970989,0.00002249438,0.000436159,0.00001774592,0.001112726],"genre_scores_gemma":[0.9968004,0.001130717,0.000364476,0.0001102577,0.00001548536,0.00001542206,0.0003225533,0.00000745426,0.001233193],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002039814,"threshold_uncertainty_score":0.006823897,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009573469745391623,"score_gpt":0.2386706214814386,"score_spread":0.2290971517360469,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}