{"id":"W3164091966","doi":"10.1093/jhered/esab031","title":"Chromosome-Level Reference Genome Assembly for the American Pika (<i>Ochotona princeps</i>)","year":2021,"lang":"en","type":"article","venue":"Journal of Heredity","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Pika; Genome; Evolutionary biology; Adaptation (eye); Ecology; Sequence assembly; Population; Gene; Genetics; National park; Transcriptome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003011121,0.0001181361,0.0002261323,0.00001497764,0.0001296142,0.00002888247,0.0002752184,0.00004579719,0.000009724535],"category_scores_gemma":[0.0001589476,0.00008215709,0.0001683501,0.00007131284,0.0001023447,0.000001245493,0.000119174,0.0001251875,0.000001568793],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001841196,"about_ca_system_score_gemma":0.0002382927,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008700379,"about_ca_topic_score_gemma":0.00005399418,"domain_scores_codex":[0.9991605,0.00004601828,0.0002854734,0.0001701031,0.0001453162,0.0001925704],"domain_scores_gemma":[0.998788,0.00006720967,0.0003511886,0.0002670845,0.0004567028,0.00006980748],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001054252,0.00007119835,0.001742797,0.0000129582,0.0002586313,0.00001099412,0.00004175768,0.00009112585,0.9909938,0.00004645103,0.00301389,0.003610991],"study_design_scores_gemma":[0.0008182789,0.0008539655,0.205331,0.00001287136,0.0001063938,0.00025245,0.000362504,0.0000191702,0.2095429,0.0003381669,0.5821266,0.000235673],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919073,0.00403693,0.002371472,0.000775334,0.0004263695,0.0001028535,0.00009810746,9.81517e-7,0.0002806369],"genre_scores_gemma":[0.992031,0.002577312,0.003402265,0.0004522236,0.001195755,0.000008799907,0.000009279868,0.00001413484,0.0003092246],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7814509,"threshold_uncertainty_score":0.3350269,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04075541706258996,"score_gpt":0.28524189803208,"score_spread":0.24448648096949,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}