{"id":"W3164091966","doi":"10.1093/jhered/esab031","title":"Chromosome-Level Reference Genome Assembly for the American Pika (<i>Ochotona princeps</i>)","year":2021,"lang":"en","type":"article","venue":"Journal of Heredity","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Pika; Genome; Evolutionary biology; Adaptation (eye); Ecology; Sequence assembly; Population; Gene; Genetics; National park; Transcriptome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007784038,0.0007606956,0.0009293535,0.002781293,0.001427639,0.001207475,0.001026582,0.0008401561,0.01000485],"category_scores_gemma":[0.002594749,0.0006227102,0.001268802,0.003566165,0.000292461,0.0006403716,0.001055074,0.001479584,0.007607237],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008065964,"about_ca_system_score_gemma":0.002440623,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01535782,"about_ca_topic_score_gemma":0.0264402,"domain_scores_codex":[0.9993683,0.00005556637,0.00007897031,0.0002481762,0.0001813765,0.0000677598],"domain_scores_gemma":[0.9990379,0.0001458236,0.0001401782,0.0001453318,0.000444374,0.00008643493],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001434581,0.0001669495,0.014742,0.003347999,0.0004007385,0.001583175,0.001854241,0.006829263,0.7679695,0.006060442,0.08631289,0.1092983],"study_design_scores_gemma":[0.0003109961,0.0005525609,0.1594868,0.0009008304,0.001182837,0.002059532,0.0006991542,0.02016021,0.1178553,0.004828926,0.6916191,0.0003437439],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.1880881,0.003673445,0.2477007,0.000756218,0.0008056739,0.0009247445,0.5213024,0.01322883,0.02351982],"genre_scores_gemma":[0.07639351,0.001370449,0.1852189,0.0002076469,0.00008343384,0.0007782577,0.7244741,0.002499896,0.008973816],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01535782,"threshold_uncertainty_score":0.03346956,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04075541706258996,"score_gpt":0.28524189803208,"score_spread":0.24448648096949,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}