{"id":"W3164500378","doi":"10.1111/zph.12853","title":"<i>Campylobacter jejuni</i> ST50, a pathogen of global importance: A comparative genomic analysis of isolates from Australia, Europe and North America","year":2021,"lang":"en","type":"article","venue":"Zoonoses and Public Health","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"U.S. Food and Drug Administration; National Health and Medical Research Council; Agrifutures Australia; Australian Government; ACT Health; Medical Research Council; Department of Health and Aged Care, Australian Government; Public Health Agency; Queensland Health; Canadian Food Inspection Agency","keywords":"Campylobacter jejuni; Phylogenetic tree; Biology; Multilocus sequence typing; Campylobacter; Genome; Geography; Genotype; Genetics; Gene; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001975773,0.000161087,0.0008000205,0.00001462428,0.00008737318,0.00003515276,0.0001303978,0.00006844242,0.0003504672],"category_scores_gemma":[0.00005075453,0.000076334,0.0001111449,0.001077936,0.0001727338,0.00008594139,0.0001093214,0.00008366519,0.000002366609],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002207279,"about_ca_system_score_gemma":0.00006991928,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007254528,"about_ca_topic_score_gemma":0.01534936,"domain_scores_codex":[0.9982499,0.0003622472,0.0005461204,0.0004047462,0.00008948566,0.0003474316],"domain_scores_gemma":[0.9987837,0.0002819407,0.0004064289,0.0001032278,0.0001496631,0.0002750135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002106158,0.0001160345,0.9806705,0.00001158363,0.0002915609,0.000002797774,0.0003522144,0.000002771776,0.003947227,0.0001649655,0.0001810629,0.01423827],"study_design_scores_gemma":[0.0001126181,0.0002693159,0.980252,0.000006287421,0.000083914,0.000004075372,0.001034795,0.00006957656,0.00001119977,0.0001068778,0.01793245,0.000116844],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929773,0.002821219,0.000009580624,0.00172229,0.000036189,0.00009926772,0.002200952,0.00001282474,0.0001203927],"genre_scores_gemma":[0.9957359,0.002112799,0.0002011072,0.00107083,0.00005034644,0.000003117176,0.0008073694,8.012827e-7,0.00001765671],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01775139,"threshold_uncertainty_score":0.9993563,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08014736192930531,"score_gpt":0.2977648861602681,"score_spread":0.2176175242309628,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}