{"id":"W3164500378","doi":"10.1111/zph.12853","title":"<i>Campylobacter jejuni</i> ST50, a pathogen of global importance: A comparative genomic analysis of isolates from Australia, Europe and North America","year":2021,"lang":"en","type":"article","venue":"Zoonoses and Public Health","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"U.S. Food and Drug Administration; National Health and Medical Research Council; Agrifutures Australia; Australian Government; ACT Health; Medical Research Council; Department of Health and Aged Care, Australian Government; Public Health Agency; Queensland Health; Canadian Food Inspection Agency","keywords":"Campylobacter jejuni; Phylogenetic tree; Biology; Multilocus sequence typing; Campylobacter; Genome; Geography; Genotype; Genetics; Gene; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002719559,0.0003066758,0.000220058,0.001100858,0.0004769314,0.000490522,0.0001563974,0.0002895225,0.0005777029],"category_scores_gemma":[0.0004851701,0.0001275373,0.0003854653,0.001869328,0.0002115597,0.0002526654,0.0004809838,0.0002828918,0.0002224463],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003905357,"about_ca_system_score_gemma":0.0005957346,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02118866,"about_ca_topic_score_gemma":0.02920349,"domain_scores_codex":[0.9997594,0.0000242216,0.00002171221,0.00007863966,0.00005698271,0.00005908691],"domain_scores_gemma":[0.9997002,0.00003481005,0.00008706169,0.00001665163,0.0001067331,0.00005451559],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009458077,0.0002544051,0.3773743,0.0005592815,0.000238482,0.001747661,0.005147358,0.0005195867,0.5626633,0.0002223681,0.001281486,0.04904604],"study_design_scores_gemma":[0.00000493071,0.0001221085,0.9896743,0.00003710956,0.00006955508,0.0007174852,0.001051515,0.0003525404,0.00404248,0.00002216872,0.003898339,0.000007369584],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967324,0.0006253436,0.0002728189,0.00005256829,0.00000528013,0.00002157678,0.001219445,0.000007076046,0.001063534],"genre_scores_gemma":[0.9880852,0.001040533,0.002468131,0.0001562196,0.000012134,0.00002935868,0.007459702,0.00001204654,0.00073665],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02118866,"threshold_uncertainty_score":0.04213065,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08014736192930531,"score_gpt":0.2977648861602681,"score_spread":0.2176175242309628,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}