{"id":"W3164937600","doi":"10.1016/s2589-7500(21)00077-7","title":"Changes in the incidence of invasive disease due to Streptococcus pneumoniae, Haemophilus influenzae, and Neisseria meningitidis during the COVID-19 pandemic in 26 countries and territories in the Invasive Respiratory Infection Surveillance Initiative: a prospective analysis of surveillance data","year":2021,"lang":"en","type":"article","venue":"The Lancet Digital Health","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":539,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"Statens Serum Institut; Merck Sharp and Dohme; Sanofi Pasteur; Robert Koch Institut; Knut och Alice Wallenbergs Stiftelse; Bundesministerium für Gesundheit; Bundesamt für Gesundheit; ABB; Public Health England; European Centre for Disease Prevention and Control; St. George's, University of London; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology; Ministry of Health; Wellcome Trust; Astellas Pharma US; Roche; Ministerstwo Edukacji i Nauki; GlaxoSmithKline; Merck; Public Health Agency; Royal College of Surgeons in Ireland; Vetenskapsrådet; Pfizer","keywords":"Streptococcus pneumoniae; Neisseria meningitidis; Haemophilus influenzae; Medicine; Incidence (geometry); Pandemic; Pneumonia; Population; Bacterial pneumonia; Transmission (telecommunications); Disease; Virology; Immunology; Microbiology; Infectious disease (medical specialty); Biology; Coronavirus disease 2019 (COVID-19); Internal medicine; Environmental health; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001656809,0.000171267,0.0005751816,0.0001792098,0.0002269401,0.00008332927,0.0003497728,0.00006450327,0.000004148335],"category_scores_gemma":[0.002074994,0.00009560318,0.0000283847,0.001239135,0.0003398052,0.0002869192,0.0002953706,0.0002816782,4.735518e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008843541,"about_ca_system_score_gemma":0.0004227969,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004959034,"about_ca_topic_score_gemma":0.388102,"domain_scores_codex":[0.9977011,0.001181494,0.0004344457,0.0003473262,0.00005497264,0.0002806376],"domain_scores_gemma":[0.9964309,0.002501329,0.000309735,0.0006264541,0.0001016631,0.00002996893],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003147226,0.00005317767,0.9897486,0.0001886877,0.00008374627,0.000007947783,0.008425632,0.00006824455,0.0008014719,0.0001383546,0.00003052395,0.0001388915],"study_design_scores_gemma":[0.000692333,0.0001265021,0.99576,0.00008657058,0.00001884471,0.000033556,0.002312475,0.000004005128,0.0001671662,0.0003253987,0.0003740302,0.00009913395],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912704,0.002255131,0.000003531406,0.004214522,0.00007620896,0.0007951429,0.001358853,0.00001458635,0.0000116104],"genre_scores_gemma":[0.9972516,0.001303244,9.05617e-7,0.001146576,0.00004667975,0.0001384848,0.0001023457,0.000007935695,0.000002234456],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.383143,"threshold_uncertainty_score":0.7496609,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05842116955319909,"score_gpt":0.3378731171085381,"score_spread":0.279451947555339,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}