{"id":"W3164937600","doi":"10.1016/s2589-7500(21)00077-7","title":"Changes in the incidence of invasive disease due to Streptococcus pneumoniae, Haemophilus influenzae, and Neisseria meningitidis during the COVID-19 pandemic in 26 countries and territories in the Invasive Respiratory Infection Surveillance Initiative: a prospective analysis of surveillance data","year":2021,"lang":"en","type":"article","venue":"The Lancet Digital Health","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":539,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"Statens Serum Institut; Merck Sharp and Dohme; Sanofi Pasteur; Robert Koch Institut; Knut och Alice Wallenbergs Stiftelse; Bundesministerium für Gesundheit; Bundesamt für Gesundheit; ABB; Public Health England; European Centre for Disease Prevention and Control; St. George's, University of London; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology; Ministry of Health; Wellcome Trust; Astellas Pharma US; Roche; Ministerstwo Edukacji i Nauki; GlaxoSmithKline; Merck; Public Health Agency; Royal College of Surgeons in Ireland; Vetenskapsrådet; Pfizer","keywords":"Streptococcus pneumoniae; Neisseria meningitidis; Haemophilus influenzae; Medicine; Incidence (geometry); Pandemic; Pneumonia; Population; Bacterial pneumonia; Transmission (telecommunications); Disease; Virology; Immunology; Microbiology; Infectious disease (medical specialty); Biology; Coronavirus disease 2019 (COVID-19); Internal medicine; Environmental health; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002675127,0.0004134006,0.0003883113,0.001645649,0.0003217186,0.001041974,0.0006530627,0.0004413282,0.0005484766],"category_scores_gemma":[0.005156868,0.0003923175,0.0008777145,0.00256527,0.0004743777,0.0008121306,0.001011463,0.0005263283,0.0002005887],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000923153,"about_ca_system_score_gemma":0.0006617151,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02842991,"about_ca_topic_score_gemma":0.03137274,"domain_scores_codex":[0.9976017,0.0007574157,0.000359071,0.0005354003,0.0004287753,0.0003177181],"domain_scores_gemma":[0.9911706,0.001136845,0.005237014,0.0006018186,0.001197762,0.0006558535],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004421701,0.000009976403,0.9993265,0.00000574354,0.00003759602,0.00001499393,0.00005455428,0.000122363,0.0000503408,0.000006016876,0.00005045355,0.0002773218],"study_design_scores_gemma":[0.000002033768,0.00004664944,0.9992939,0.000004144316,0.00001293591,0.00005834312,0.0001941626,0.0002661441,0.00005176141,0.000003140801,0.00006372995,0.000002963674],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973567,0.0001195735,0.00009013226,0.00002258625,0.000003276418,0.000009872623,0.002173962,0.00000556094,0.0002183787],"genre_scores_gemma":[0.9970345,0.0000819837,0.0001591493,0.00001173879,0.000003674752,0.00001542729,0.002621104,0.000002597443,0.0000698059],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02842991,"threshold_uncertainty_score":0.05652887,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05842116955319909,"score_gpt":0.3378731171085381,"score_spread":0.279451947555339,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}