{"id":"W3165029908","doi":"10.1139/cjm-2021-0012","title":"Comparative genomic analyses of β-lactamase (<i>bla<sub>CMY-42</sub></i>)-encoding plasmids isolated from wastewater treatment plants in Canada","year":2021,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; University of Regina","funders":"","keywords":"Plasmid; Biology; Integron; Microbiology; Insertion sequence; Genetics; TetR; Tetracycline; Antibiotic resistance; Efflux; Horizontal gene transfer; Gene cassette; Gene; Transposable element; Antibiotics; Phylogenetics; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000984146,0.0003223043,0.0004006439,0.001519069,0.0009346963,0.0007545265,0.0003381767,0.0002449251,0.001506795],"category_scores_gemma":[0.0003607025,0.0002094473,0.000548934,0.001925942,0.0003444085,0.00008866126,0.0003694984,0.0004417287,0.000430097],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002895772,"about_ca_system_score_gemma":0.004452681,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.5767559,"about_ca_topic_score_gemma":0.7004884,"domain_scores_codex":[0.9996967,0.000007427225,0.00001189558,0.00009331224,0.00009686961,0.00009377443],"domain_scores_gemma":[0.999732,0.00002104959,0.00003719128,0.00001058253,0.0001342452,0.00006498743],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002863333,0.00007165191,0.02893413,0.0001530229,0.0000531223,0.0003719828,0.000966041,0.0003931069,0.9560229,0.0002546558,0.0004310262,0.01206203],"study_design_scores_gemma":[0.00001685944,0.0002306149,0.8955783,0.00003398755,0.00009654628,0.0006492294,0.001965183,0.001133034,0.08689584,0.00005710116,0.01331024,0.00003305682],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9827863,0.0005419937,0.002012937,0.000103262,0.0000106827,0.00008464634,0.01078619,0.00006796791,0.003606122],"genre_scores_gemma":[0.9616402,0.001075365,0.007463994,0.000162342,0.000007438894,0.00009145858,0.02193809,0.00006469348,0.007556398],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4232441,"threshold_uncertainty_score":0.8514734,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02027941522464919,"score_gpt":0.2412764266267692,"score_spread":0.22099701140212,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}