{"id":"W3165272147","doi":"10.1128/mra.00295-21","title":"High-Quality Reference Genome Sequence for the Oomycete Vegetable Pathogen Phytophthora capsici Strain LT1534","year":2021,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Canadian Institute for Advanced Research; National Institute of Food and Agriculture; New York State Department of Agriculture and Markets; U.S. Department of Agriculture; National Institutes of Health; National Science Foundation","keywords":"Oomycete; Phytophthora capsici; Biology; Genome; Whole genome sequencing; Transcriptome; Phytophthora; Genetics; Pathogen; Reference genome; Computational biology; Gene; Botany; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001333244,0.001685092,0.002314962,0.003031049,0.001690007,0.001152956,0.001609996,0.001581516,0.01069569],"category_scores_gemma":[0.001959578,0.0006560057,0.001366905,0.006854248,0.0003520162,0.0007576914,0.0008316019,0.00225356,0.01204197],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00111283,"about_ca_system_score_gemma":0.003190505,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00915144,"about_ca_topic_score_gemma":0.01801414,"domain_scores_codex":[0.9990402,0.0001180723,0.0001160699,0.0003097555,0.000280246,0.0001356599],"domain_scores_gemma":[0.9989061,0.0001578641,0.0001412805,0.0001495614,0.0005360127,0.0001091909],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001715007,0.0002830187,0.002479899,0.005181963,0.0002741291,0.0008286476,0.000548055,0.002243989,0.854929,0.00176904,0.09671761,0.03302958],"study_design_scores_gemma":[0.0006063608,0.0007573556,0.05396169,0.001375437,0.001178339,0.001714494,0.0004244277,0.007023939,0.135972,0.002104773,0.794549,0.0003322307],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.07072209,0.00577243,0.06689799,0.0006272555,0.00106602,0.001021285,0.8347973,0.005763631,0.01333194],"genre_scores_gemma":[0.01924561,0.001229977,0.04423515,0.0001608941,0.0000537505,0.0005790187,0.9296312,0.0008924368,0.003971956],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01069569,"threshold_uncertainty_score":0.03578067,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05698579347448978,"score_gpt":0.2606941500404447,"score_spread":0.2037083565659549,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}