{"id":"W3165417164","doi":"10.1128/aac.00360-21","title":"Genomic Epidemiology of Carbapenemase-Producing <i>Enterobacterales</i> at a Hospital System in Toronto, Ontario, Canada, 2007 to 2018","year":2021,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; Sinai Health System; Public Health Ontario; University of Toronto","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Epidemiology; Cluster (spacecraft); Transmission (telecommunications); Molecular epidemiology; Population; Biology; Index case; Medicine; Genetics; Genotype; Outbreak; Virology; Internal medicine; Environmental health; Gene; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001798036,0.0003342075,0.0002179871,0.0009076141,0.001026719,0.000776394,0.0005241315,0.0002332617,0.001226693],"category_scores_gemma":[0.001040704,0.0002346568,0.0002354517,0.001859629,0.0005854093,0.0001773957,0.0004897579,0.0002622753,0.0001189421],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.009127655,"about_ca_system_score_gemma":0.008214835,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9390956,"about_ca_topic_score_gemma":0.9562827,"domain_scores_codex":[0.9995106,0.00003508632,0.00005302804,0.0001002529,0.0001306851,0.0001702454],"domain_scores_gemma":[0.998638,0.00006970804,0.0004579341,0.00003280222,0.0004381754,0.0003633686],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005444406,0.00001002249,0.9954725,0.00004040695,0.00001887986,0.0003367582,0.0006754064,0.0001147744,0.0009664928,0.00004053165,0.0004962297,0.001773595],"study_design_scores_gemma":[0.000002011006,0.00002505313,0.9985545,0.00001364212,0.000007907261,0.0001389808,0.0007727096,0.00009915539,0.00007270301,0.000003339337,0.000307839,0.000002227552],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961299,0.0002610618,0.00008345603,0.00008765481,0.000004681372,0.00003585407,0.002404153,0.00000898774,0.0009843466],"genre_scores_gemma":[0.9978824,0.0002185297,0.0001249386,0.00005584106,0.000005285628,0.000009099786,0.00137491,0.000001994097,0.0003270236],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06090438,"threshold_uncertainty_score":0.122526,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007615994734377126,"score_gpt":0.2285921863406495,"score_spread":0.2209761916062724,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}