{"id":"W3165639034","doi":"10.1093/nar/gkab391","title":"DomainViz: intuitive visualization of consensus domain distributions across groups of proteins","year":2021,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta","keywords":"Biology; Protein domain; Domain (mathematical analysis); Visualization; Protein function; Protein family; Function (biology); Computational biology; Identification (biology); Conserved sequence; Protein methods; Protein function prediction; Bioinformatics; Computer science; Genetics; Data mining; Sequence analysis; Peptide sequence; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009599412,0.001154007,0.0008911675,0.003668282,0.0005281143,0.001632351,0.001244671,0.0009996789,0.03622175],"category_scores_gemma":[0.001949794,0.000478037,0.0007150308,0.001988534,0.0003235941,0.002025716,0.002246271,0.001576397,0.004679843],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004726275,"about_ca_system_score_gemma":0.0006651699,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001889983,"about_ca_topic_score_gemma":0.001950931,"domain_scores_codex":[0.9996972,0.00006020243,0.00002141758,0.00005800609,0.0000925298,0.00007072787],"domain_scores_gemma":[0.9991841,0.0003882075,0.0001105304,0.00008859136,0.000117452,0.0001111213],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.004427285,0.0004268071,0.01512649,0.003849402,0.0005477984,0.001405863,0.002978996,0.01095016,0.1786808,0.02710217,0.4571614,0.2973428],"study_design_scores_gemma":[0.001227566,0.0005202707,0.0539003,0.001139532,0.0002234756,0.003574546,0.002139001,0.283514,0.1144946,0.06408843,0.474641,0.0005371377],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1129394,0.002247232,0.4691279,0.00158829,0.0005758752,0.0003900433,0.0723094,0.3248006,0.01602127],"genre_scores_gemma":[0.4154263,0.001988991,0.4903839,0.0007587998,0.0001779436,0.001107081,0.05178468,0.02930232,0.009070088],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.03622175,"threshold_uncertainty_score":0.1211738,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03307171914641798,"score_gpt":0.3561226055782698,"score_spread":0.3230508864318518,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}