{"id":"W3165692801","doi":"10.1093/gbe/evab124","title":"Genomic Rearrangements and Sequence Evolution across Brown Algal Organelles","year":2021,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Marine and coastal plant biology","field":"Earth and Planetary Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria; University of British Columbia","funders":"","keywords":"Biology; Genome; Plastid; Mitochondrial DNA; Intron; Genetics; Evolutionary biology; Gene; Phylogenetic tree; Genome evolution; Nuclear gene; Phylogenetics; Chloroplast","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001836658,0.0001114987,0.0001402496,0.00002559565,0.0002733342,0.00002198429,0.00006451909,0.0001518471,0.0004281733],"category_scores_gemma":[0.00002595976,0.00009717543,0.00001908458,0.00009799357,0.000198333,0.00008724011,0.00005837973,0.00009931377,0.00009137516],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001050675,"about_ca_system_score_gemma":0.00004800249,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003522976,"about_ca_topic_score_gemma":0.005667925,"domain_scores_codex":[0.9990742,0.0001007583,0.0001440763,0.0003373013,0.0000382145,0.0003054882],"domain_scores_gemma":[0.9997001,0.00003782146,0.0000476022,0.0001014606,0.00003491534,0.00007810995],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005564431,0.000006714481,0.9362602,0.00001449486,0.00002287411,0.00001242363,0.00008889874,0.00001361103,0.0386736,0.0005830906,0.00004731278,0.02422111],"study_design_scores_gemma":[0.00022046,0.0001200618,0.9852732,0.000003453448,0.00001024799,0.0002261916,0.0002122936,0.0003433298,0.00004481815,0.003416928,0.009996185,0.0001327982],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9910346,0.005626334,0.0004074791,0.000174383,0.000206733,0.00007086278,0.0002565626,0.00002618059,0.002196908],"genre_scores_gemma":[0.9971175,0.0007696051,0.0001872053,0.0001042601,0.0001242831,9.734424e-7,0.000736427,0.000001841692,0.0009579476],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04901301,"threshold_uncertainty_score":0.5325709,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01672358315839275,"score_gpt":0.2285395864511411,"score_spread":0.2118160032927483,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}