{"id":"W3166500275","doi":"10.3389/fpubh.2021.599285","title":"The Role of Whole Genome Sequencing in the Surveillance of Antimicrobial Resistant Enterococcus spp.: A Scoping Review","year":2021,"lang":"en","type":"review","venue":"Frontiers in Public Health","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Calgary","funders":"Government of Alberta; University of Calgary","keywords":"Enterococcus faecium; Enterococcus; Antibiotic resistance; Biology; Metagenomics; Whole genome sequencing; Checklist; Genome; Biotechnology; Microbiology; Genetics; Antibiotics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.04288511,0.001870154,0.006320079,0.02100454,0.001179283,0.006129435,0.003131657,0.005234564,0.004070366],"category_scores_gemma":[0.1611339,0.001450306,0.005983299,0.01863599,0.001967614,0.007681303,0.003586424,0.003024108,0.001182066],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005077092,"about_ca_system_score_gemma":0.02514656,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006881982,"about_ca_topic_score_gemma":0.0118536,"domain_scores_codex":[0.9667429,0.01411668,0.0126251,0.001265637,0.004703774,0.0005459321],"domain_scores_gemma":[0.7868149,0.1498165,0.02074464,0.003287009,0.03805893,0.00127802],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","study_design_scores_codex":[0.0001363293,0.00001726989,0.0005459542,0.7909559,0.001685191,0.0003322142,0.001079986,0.0002023761,0.0005608307,0.00178467,0.01861082,0.1840884],"study_design_scores_gemma":[0.00002852409,0.00005879224,0.0007671051,0.9131141,0.003292924,0.0002984199,0.0004107541,0.00007436084,0.0001752168,0.001160593,0.08058579,0.00003342974],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002746163,0.9911091,0.0007759649,0.004176672,0.002177919,0.0004870007,0.0002551669,0.00002093302,0.0007225656],"genre_scores_gemma":[0.002891768,0.990229,0.002167076,0.002280084,0.0006466661,0.001169283,0.0002376156,0.00001790389,0.0003607036],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.04288511,"threshold_uncertainty_score":0.2268009,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05151997162368101,"score_gpt":0.3476086320208066,"score_spread":0.2960886603971256,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}