{"id":"W3167116601","doi":"10.3390/ani11061658","title":"A Grain-Based SARA Challenge Affects the Composition of Epimural and Mucosa-Associated Bacterial Communities throughout the Digestive Tract of Dairy Cows","year":2021,"lang":"en","type":"article","venue":"Animals","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Teknologi og Produktion, Det Frie Forskningsråd","keywords":"Firmicutes; Bacteroidetes; Biology; Ileum; Jejunum; Rumen; Actinobacteria; Prevotella; Ruminococcus; Microbiome; Eubacterium; Cecum; Dry matter; Gut flora; Duodenum; Proteobacteria; Digestion (alchemy); Intestinal mucosa; Large intestine; Bifidobacterium; Animal science; Feces; Food science; Microbiology; Internal medicine; Lactobacillus; 16S ribosomal RNA; Bacteria; Ecology; Endocrinology; Biochemistry; Chemistry; Bioinformatics; Fermentation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002015586,0.0002654689,0.0004759169,0.0002656697,0.0002899081,0.0004888885,0.0001745091,0.0003884988,0.0004429629],"category_scores_gemma":[0.0002630787,0.0002915846,0.0002269421,0.000188778,0.0003338671,0.0002641797,0.000380661,0.0005349414,0.0001239656],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000367985,"about_ca_system_score_gemma":0.0002271739,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002042139,"about_ca_topic_score_gemma":0.003580985,"domain_scores_codex":[0.9997317,0.00004343031,0.00002432712,0.0000875815,0.00004533757,0.00006767773],"domain_scores_gemma":[0.9996277,0.00005206783,0.0001199791,0.00001822802,0.00004067965,0.0001413222],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.004058601,0.0003598503,0.02726517,0.0000460745,0.00003696647,0.00008827615,0.0002327635,0.0000714728,0.9654367,0.00001240122,0.0000230643,0.002368674],"study_design_scores_gemma":[0.00007219562,0.009853557,0.8904019,0.00001117397,0.00009949067,0.0002045573,0.0007742126,0.0008067814,0.09718405,0.000043872,0.0005255432,0.00002264194],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9998596,0.00003711035,0.00003208547,0.000005400206,9.28314e-7,0.000002440176,0.00002650458,8.341893e-7,0.00003503609],"genre_scores_gemma":[0.9988833,0.00009820248,0.0002900252,0.00005266702,0.000003704483,0.0000158131,0.0001702065,0.000002564372,0.0004835535],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002042139,"threshold_uncertainty_score":0.004060447,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03902069512879498,"score_gpt":0.2701296599588728,"score_spread":0.2311089648300779,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}