{"id":"W3167116601","doi":"10.3390/ani11061658","title":"A Grain-Based SARA Challenge Affects the Composition of Epimural and Mucosa-Associated Bacterial Communities throughout the Digestive Tract of Dairy Cows","year":2021,"lang":"en","type":"article","venue":"Animals","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Teknologi og Produktion, Det Frie Forskningsråd","keywords":"Firmicutes; Bacteroidetes; Biology; Ileum; Jejunum; Rumen; Actinobacteria; Prevotella; Ruminococcus; Microbiome; Eubacterium; Cecum; Dry matter; Gut flora; Duodenum; Proteobacteria; Digestion (alchemy); Intestinal mucosa; Large intestine; Bifidobacterium; Animal science; Feces; Food science; Microbiology; Internal medicine; Lactobacillus; 16S ribosomal RNA; Bacteria; Ecology; Endocrinology; Biochemistry; Chemistry; Bioinformatics; Fermentation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000211508,0.0001027457,0.0002457199,0.00000560233,0.0002105158,0.00002230655,0.0001384577,0.00006604312,0.0001077784],"category_scores_gemma":[0.0000540629,0.00003373686,0.00009180341,0.0001318631,0.0003856297,0.00005265393,0.00005300359,0.00009937704,0.000001401657],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008191046,"about_ca_system_score_gemma":0.00001220921,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002909168,"about_ca_topic_score_gemma":0.0003630791,"domain_scores_codex":[0.9988805,0.0006009008,0.000167814,0.0001051675,0.0001058316,0.0001397763],"domain_scores_gemma":[0.9981478,0.00147971,0.0001718567,0.00006025297,0.0001168477,0.00002346485],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002310649,0.0005032014,0.007333279,0.00001978372,0.00003990734,0.000004038596,0.001027823,0.000002036174,0.9863176,0.002623213,0.0002692882,0.001628751],"study_design_scores_gemma":[0.0004256891,0.0008986081,0.9524975,0.00007769195,0.00002916353,0.000005459482,0.00303982,0.00005378884,0.04155416,0.0007216178,0.0006018708,0.00009460356],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942277,0.0005933379,6.616843e-7,0.004278998,0.00005021244,0.0001824261,0.0002340096,0.0000136491,0.00041898],"genre_scores_gemma":[0.9992959,0.0001828698,0.000007392243,0.0002254333,0.00005116038,0.00001030016,0.0002177669,9.223198e-7,0.000008266829],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9451643,"threshold_uncertainty_score":0.1619139,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03902069512879498,"score_gpt":0.2701296599588728,"score_spread":0.2311089648300779,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}