{"id":"W3168153517","doi":"10.1101/2021.05.28.446255","title":"A Longitudinal Study of Antimicrobial Resistance in <i>Enterococcus</i> spp. Isolated from a Beef Processing Plant and Retail Ground Beef","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Beef Cattle Research Council; Government of Alberta","keywords":"Enterococcus faecalis; Enterococcus faecium; Antimicrobial; Antibiotic resistance; Enterococcus; Enterococcus hirae; Biology; Beef cattle; Tetracycline; Microbiology; Veterinary medicine; Biotechnology; Food science; Antibiotics; Bacteria; Medicine; Staphylococcus aureus; Animal science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005351643,0.0002279859,0.0002188795,0.0006145841,0.0004284559,0.0005752764,0.0001933706,0.0003495465,0.0006582522],"category_scores_gemma":[0.0008617304,0.0002189035,0.0002865556,0.0006153367,0.0002215228,0.0004137316,0.0004161413,0.000404367,0.0002038998],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003224482,"about_ca_system_score_gemma":0.0002236308,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005751209,"about_ca_topic_score_gemma":0.006303083,"domain_scores_codex":[0.9996001,0.00008058096,0.00003506781,0.0001287405,0.00006531348,0.00009025398],"domain_scores_gemma":[0.9990169,0.00009144031,0.0004135706,0.00005946214,0.0002135661,0.0002050484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00008777146,0.0000804304,0.9961522,0.000008432238,0.00002380368,0.0001469395,0.0003282726,0.00001333585,0.002044192,0.000005116328,0.00004540917,0.001064154],"study_design_scores_gemma":[8.886893e-7,0.0002163794,0.9987032,0.000004075161,0.000008652468,0.000180055,0.0005484633,0.00005345447,0.0001804607,0.000002925478,0.00009933399,0.000002052908],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997329,0.00003027735,0.00003879289,0.000006714221,0.000001454152,0.000004138816,0.0001025932,0.000001036733,0.00008213669],"genre_scores_gemma":[0.9994855,0.000035224,0.00007885962,0.00001378367,0.000002384131,0.000004620326,0.0002561971,0.000001019093,0.0001223164],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005751209,"threshold_uncertainty_score":0.01143551,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02110371871783523,"score_gpt":0.2437492379126688,"score_spread":0.2226455191948336,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}