{"id":"W3168176663","doi":"10.1101/2021.05.28.445195","title":"Modulation of the host cell transcriptome and epigenome by <i>Fusobacterium nucleatum</i>","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre; Burnaby Hospital; University of Guelph; Simon Fraser University","funders":"Canadian Institutes of Health Research; Canada's Michael Smith Genome Sciences Centre","keywords":"Biology; Downregulation and upregulation; Epigenomics; Epigenome; Fusobacterium nucleatum; Transcriptome; CCL20; Chromatin immunoprecipitation; Cell; DNA methylation; Cell biology; Cancer research; Gene; Gene expression; Immunology; Genetics; Chemokine; Immune system; Chemokine receptor; Promoter","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009322492,0.0001782314,0.0002713587,0.0002182874,0.0001992789,0.0003381927,0.0001015898,0.0001845625,0.001124822],"category_scores_gemma":[0.000104146,0.00008848541,0.0002401746,0.0002526731,0.0001437378,0.000137746,0.0001940982,0.0002374573,0.0002093165],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002409328,"about_ca_system_score_gemma":0.0001340832,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002154219,"about_ca_topic_score_gemma":0.002280064,"domain_scores_codex":[0.9998831,0.00001141975,0.000005321366,0.00004513681,0.00002659237,0.00002840397],"domain_scores_gemma":[0.9999349,0.0000137108,0.00001908674,0.000005718084,0.00001376042,0.00001286801],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000918201,0.000004510858,0.00136933,0.00003536333,0.000006975954,0.00002047934,0.00001401439,0.00005305187,0.9975938,0.0000175158,0.00006518923,0.0007278949],"study_design_scores_gemma":[0.00001375935,0.0003407177,0.3091232,0.00002923563,0.0000709971,0.0003822079,0.0003276021,0.00329849,0.6800277,0.0001292908,0.006229732,0.00002702735],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9892126,0.001788819,0.003024415,0.0000993698,0.00004044436,0.00001975035,0.004596191,0.00009758303,0.001120911],"genre_scores_gemma":[0.9922839,0.000510546,0.001655394,0.0001389676,0.00001871147,0.00004379746,0.0040165,0.00002285905,0.001309415],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002154219,"threshold_uncertainty_score":0.004283369,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01002420028788131,"score_gpt":0.2121636632335523,"score_spread":0.202139462945671,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}