{"id":"W3168734789","doi":"10.1128/aem.00467-21","title":"Legionella pneumophila CRISPR-Cas Suggests Recurrent Encounters with One or More Phages in the Family <i>Microviridae</i>","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Legionella pneumophila; Legionnaires' disease; Microbiology; Legionella; Isolation (microbiology); Biology; Pneumonia; Bacteria; Medicine; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002661331,0.0003487989,0.000255984,0.0002521576,0.0004611891,0.001125519,0.0004033641,0.0007740544,0.003566825],"category_scores_gemma":[0.0006232543,0.000210721,0.0004197337,0.00017884,0.0006157544,0.0007753101,0.000492736,0.0009946612,0.0009594557],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005899835,"about_ca_system_score_gemma":0.0004311886,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001434305,"about_ca_topic_score_gemma":0.00219349,"domain_scores_codex":[0.9996933,0.00002653869,0.0000187833,0.0001196053,0.00008764966,0.00005415193],"domain_scores_gemma":[0.9995763,0.0001070321,0.0001100807,0.00007656812,0.000044623,0.00008549093],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001611564,0.00003246453,0.005739801,0.0002133063,0.00003786739,0.0005698923,0.0001667637,0.0004138154,0.9747813,0.003985327,0.001835749,0.01206258],"study_design_scores_gemma":[0.00003536182,0.0003678659,0.03031403,0.00008690314,0.0000841703,0.002138031,0.0005477471,0.005646642,0.9113732,0.003631186,0.04568256,0.00009225083],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9191333,0.003534023,0.04048894,0.00333625,0.000799444,0.00006978819,0.001345265,0.005563485,0.02572946],"genre_scores_gemma":[0.9849052,0.0007254291,0.007758752,0.0006198799,0.0000226757,0.00001642301,0.0004809266,0.0001008411,0.00536986],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003566825,"threshold_uncertainty_score":0.01193225,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01003039902080124,"score_gpt":0.2276430580917287,"score_spread":0.2176126590709274,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}