{"id":"W3168734789","doi":"10.1128/aem.00467-21","title":"Legionella pneumophila CRISPR-Cas Suggests Recurrent Encounters with One or More Phages in the Family <i>Microviridae</i>","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Legionella pneumophila; Legionnaires' disease; Microbiology; Legionella; Isolation (microbiology); Biology; Pneumonia; Bacteria; Medicine; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001239598,0.0002143179,0.0001950325,0.00003089437,0.0001118463,0.00002781885,0.0002032488,0.0001563673,0.00001406554],"category_scores_gemma":[0.000003366172,0.0001416926,0.00003968803,0.00007917017,0.000464683,0.000003981152,0.0001965388,0.0002120452,0.00001669868],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002611714,"about_ca_system_score_gemma":0.00004587269,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002385607,"about_ca_topic_score_gemma":0.00007226229,"domain_scores_codex":[0.9987702,0.00007326594,0.0001778856,0.0005353517,0.00007292473,0.0003704172],"domain_scores_gemma":[0.9995606,0.00002941967,0.00004746586,0.0002993628,0.000005530362,0.00005763206],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002650855,0.0002203402,0.00218871,0.00001690777,0.00003980933,0.00007550769,0.0002384785,0.000007041333,0.9936838,0.00001987356,0.001607371,0.001637052],"study_design_scores_gemma":[0.00285737,0.0007717104,0.02134508,0.00003523624,0.00004782866,0.001346168,0.006504748,0.000005028697,0.8598477,0.00003015805,0.1066088,0.0006001549],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956481,0.002609253,0.00004024614,0.0007829655,0.00004554537,0.0002460593,0.00006970295,0.00000489061,0.000553236],"genre_scores_gemma":[0.9922611,0.004321198,0.00009799644,0.002261881,0.00009789633,0.00004702655,0.0006573221,0.00002137361,0.0002342843],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1338361,"threshold_uncertainty_score":0.5778058,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01003039902080124,"score_gpt":0.2276430580917287,"score_spread":0.2176126590709274,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}