{"id":"W3169353850","doi":"10.1093/gbe/evab142","title":"Mobile Gene Sequence Evolution within Individual Human Gut Microbiomes Is Better Explained by Gene-Specific Than Host-Specific Selective Pressures","year":2021,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill Genome Centre; Université de Montréal","funders":"","keywords":"Biology; Gene; Microbiome; Host (biology); Evolutionary biology; Genetics; Computational biology; Sequence (biology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005523142,0.000284311,0.0002845367,0.000687175,0.0002563002,0.0004763853,0.0002007931,0.0004743437,0.000869273],"category_scores_gemma":[0.002254969,0.0002070234,0.0004341218,0.0005965724,0.0005392265,0.0006183116,0.0004016835,0.0003338298,0.0001607814],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002262438,"about_ca_system_score_gemma":0.0001447736,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002736034,"about_ca_topic_score_gemma":0.004619821,"domain_scores_codex":[0.9997284,0.00006050996,0.00001481399,0.000133903,0.00002555898,0.000036939],"domain_scores_gemma":[0.9995463,0.0001799437,0.0001411041,0.00007499975,0.0000297309,0.00002777122],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003017944,0.00003596127,0.9223576,0.0001228922,0.0004625644,0.0002344789,0.0007937036,0.00888766,0.04274153,0.000656334,0.0001001658,0.02330531],"study_design_scores_gemma":[0.000006729631,0.00009211971,0.9724578,0.00001751789,0.00008583414,0.0003742808,0.0003942647,0.02319359,0.001522933,0.001497907,0.00033284,0.00002414466],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981455,0.0001517947,0.001489373,0.00002016077,0.000001556887,0.000003029469,0.0000596432,0.000008517505,0.000120528],"genre_scores_gemma":[0.9990607,0.00007178786,0.0007025127,0.00001374398,0.000002251664,0.000003400333,0.00009624791,0.000004732787,0.00004461696],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002736034,"threshold_uncertainty_score":0.005440235,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01548636175761877,"score_gpt":0.259368365037732,"score_spread":0.2438820032801133,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}