{"id":"W3169353850","doi":"10.1093/gbe/evab142","title":"Mobile Gene Sequence Evolution within Individual Human Gut Microbiomes Is Better Explained by Gene-Specific Than Host-Specific Selective Pressures","year":2021,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill Genome Centre; Université de Montréal","funders":"","keywords":"Biology; Gene; Microbiome; Host (biology); Evolutionary biology; Genetics; Computational biology; Sequence (biology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002682118,0.000312266,0.0002911468,0.00008730461,0.0005331181,0.00004166635,0.0002066012,0.0005697521,0.00005222884],"category_scores_gemma":[0.000008422679,0.0003169323,0.00009513984,0.0001944284,0.0003317577,0.00001672656,0.0001877683,0.0002236479,0.0000256507],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001195788,"about_ca_system_score_gemma":0.0001507882,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006040384,"about_ca_topic_score_gemma":0.00005443146,"domain_scores_codex":[0.9978215,0.0002497001,0.0003773672,0.0009278074,0.00008183848,0.0005417838],"domain_scores_gemma":[0.9991006,0.00001042708,0.0001814227,0.0003913197,0.0001926214,0.000123606],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007791197,0.00008164541,0.01503528,0.00002080152,0.0001156515,0.00000334094,0.000530431,0.000004442995,0.9775783,0.0001476993,0.006295778,0.0001086908],"study_design_scores_gemma":[0.001112936,0.0008801425,0.1924425,0.00001540655,0.00005047093,0.0002015798,0.0003214944,0.000004799428,0.7381455,0.0005343291,0.06567476,0.0006159989],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9508635,0.04535951,0.00198469,0.0001316924,0.0002704153,0.0003465382,0.0009545861,0.00003138516,0.00005772295],"genre_scores_gemma":[0.9913304,0.002014616,0.001189909,0.0003310903,0.0004267184,0.00006692704,0.003998225,0.00002898975,0.0006130597],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2394328,"threshold_uncertainty_score":0.9999283,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01548636175761877,"score_gpt":0.259368365037732,"score_spread":0.2438820032801133,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}