{"id":"W3169368580","doi":"10.3390/insects12060519","title":"Reference Transcriptome Data in Silkworm Bombyx mori","year":2021,"lang":"en","type":"article","venue":"Insects","topic":"Silk-based biomaterials and applications","field":"Materials Science","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Bioscience Database Center; Institute of Genetics; Bio-oriented Technology Research Advancement Institution; Japan Science and Technology Agency; Ministry of Agriculture, Forestry and Fisheries; Cabinet Office, Government of Japan; Research Organization of Information and Systems","keywords":"Biology; Transcriptome; Bombyx mori; Gene; Bombyx; Genome; Computational biology; Gene expression; Genetics; Midgut; RNA-Seq; De novo transcriptome assembly; Larva; Botany","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002640944,0.0001078701,0.0001610628,0.00003987793,0.00006641653,0.0001148984,0.0005259835,0.00007032954,0.001055686],"category_scores_gemma":[0.00004797034,0.0001001644,0.00001604571,0.000292363,0.0000501435,0.0002230036,0.0001392656,0.00005987185,0.0004028713],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002920546,"about_ca_system_score_gemma":0.0001419981,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004473251,"about_ca_topic_score_gemma":0.0005635019,"domain_scores_codex":[0.9987973,0.00005942491,0.0002501986,0.000457796,0.0001798823,0.0002554224],"domain_scores_gemma":[0.998849,0.00004894288,0.00004627603,0.0009422243,0.00004629364,0.00006727293],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001043144,0.00008648272,0.0003148605,0.00002067438,0.000001392924,0.00003944594,0.0001071633,0.000002234413,0.9970359,0.0012859,0.0006269803,0.0004685181],"study_design_scores_gemma":[0.0003893297,0.00001928716,0.02075507,0.00004235959,0.000007079569,0.0000180279,0.00005807028,0.00005720796,0.9643678,0.001273411,0.0128338,0.0001785585],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964851,0.0002472464,0.00007455589,0.0005412379,0.0003650593,0.0001100555,0.0003067023,0.00007797247,0.001792137],"genre_scores_gemma":[0.9979513,0.00003808056,0.001141632,0.0003736789,0.00009886565,0.00003159424,0.0002131353,0.00001153553,0.000140123],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03266812,"threshold_uncertainty_score":0.9998575,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07481795485811092,"score_gpt":0.3054324670014481,"score_spread":0.2306145121433372,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}