{"id":"W3170193969","doi":"","title":"Imputing the mammalian virome with linear filtering and singular value decomposition","year":2021,"lang":"en","type":"preprint","venue":"arXiv (Cornell University)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"Human virome; Singular value decomposition; Embedding; Computational biology; Amazon rainforest; Biology; Genome; Evolutionary biology; Computer science; Artificial intelligence; Ecology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001740734,0.0007344633,0.0006988908,0.001772199,0.0006087329,0.00115861,0.000660779,0.0008729513,0.0009766765],"category_scores_gemma":[0.006745411,0.000394933,0.001396377,0.00164928,0.0008150514,0.0008835272,0.0008679624,0.00120232,0.0005429066],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005689963,"about_ca_system_score_gemma":0.0006522276,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005836017,"about_ca_topic_score_gemma":0.007179135,"domain_scores_codex":[0.9993179,0.0002699532,0.00002981783,0.0002152817,0.00009439863,0.00007271515],"domain_scores_gemma":[0.9977483,0.001348933,0.0002524292,0.0004164693,0.0001613945,0.00007242336],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.000711279,0.0002556402,0.05978135,0.0003600306,0.001039508,0.0008368611,0.0005355053,0.4698299,0.0777875,0.0292826,0.006200624,0.3533793],"study_design_scores_gemma":[0.00001471703,0.00005556698,0.006548193,0.00001459625,0.00005355814,0.00009757806,0.00004632004,0.9629726,0.005213031,0.02330687,0.001649893,0.00002707142],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.135849,0.000448788,0.8606998,0.0003347604,0.00005172289,0.00003312415,0.0007187962,0.001019379,0.0008444734],"genre_scores_gemma":[0.6974276,0.0003765352,0.2972659,0.0002495738,0.000179588,0.00009257996,0.002912203,0.0001684262,0.001327661],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.005836017,"threshold_uncertainty_score":0.01160407,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02527729063343743,"score_gpt":0.1823389058701471,"score_spread":0.1570616152367097,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}