{"id":"W3170333449","doi":"10.1111/mec.16020","title":"Whole‐genome sequencing and genome regions of special interest: Lessons from major histocompatibility complex, sex determination, and plant self‐incompatibility","year":2021,"lang":"en","type":"article","venue":"Molecular Ecology","topic":"Plant Reproductive Biology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Ministry of Minority Affairs; Agence Nationale de la Recherche; Deutsche Forschungsgemeinschaft","keywords":"Biology; Locus (genetics); Genome; Genetics; Computational biology; Major histocompatibility complex; Haplotype; Genomics; Genotyping; Reference genome; Whole genome sequencing; DNA sequencing; Evolutionary biology; Gene; Allele; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002046134,0.0004649081,0.000557517,0.0007319751,0.0003645164,0.001222955,0.0007482016,0.00155944,0.001196199],"category_scores_gemma":[0.002939328,0.0002237592,0.0003857763,0.001177086,0.001708739,0.003281141,0.0006211814,0.002494487,0.0003646054],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007064086,"about_ca_system_score_gemma":0.0009233117,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002263799,"about_ca_topic_score_gemma":0.003380464,"domain_scores_codex":[0.9996089,0.00009781081,0.00002421193,0.000141026,0.0000877089,0.000040391],"domain_scores_gemma":[0.99818,0.0009117497,0.0001530625,0.0001796506,0.000319236,0.0002562994],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004531885,0.0001064163,0.01192681,0.003680911,0.0002172362,0.0008692109,0.001294441,0.005755613,0.1670124,0.098565,0.02588418,0.6842347],"study_design_scores_gemma":[0.00005934598,0.0004828757,0.04754564,0.001754538,0.0002157339,0.003065527,0.002267058,0.01044984,0.05004827,0.3721794,0.511733,0.0001986556],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"review","genre_gemma":"empirical","genre_scores_codex":[0.1352051,0.5719103,0.1873861,0.08476736,0.003828931,0.00007357688,0.001684107,0.0007297851,0.01441482],"genre_scores_gemma":[0.3788881,0.4211436,0.1603174,0.02188369,0.003635817,0.0001114444,0.00307164,0.0004722624,0.01047607],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.002263799,"threshold_uncertainty_score":0.01082116,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0315619084040727,"score_gpt":0.2674952729250987,"score_spread":0.235933364521026,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}