{"id":"W3171311736","doi":"10.1128/aac.00277-21","title":"Diversity of Sequence Types and Impact of Fitness Cost among Carbapenem-Resistant Acinetobacter baumannii Isolates from Tripoli, Libya","year":2021,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Acinetobacter baumannii; Multilocus sequence typing; Biology; Carbapenem; Acinetobacter; Molecular epidemiology; Microbiology; Whole genome sequencing; Typing; Genetics; Genome; Gene; Genotype; Pseudomonas aeruginosa; Bacteria; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003304509,0.0002639015,0.000186916,0.001643125,0.0007782306,0.0009067727,0.0002207696,0.0002813275,0.001097595],"category_scores_gemma":[0.0007843595,0.0001482719,0.0001795689,0.001571554,0.0004532133,0.000324702,0.0004433049,0.0003583864,0.000180501],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000594862,"about_ca_system_score_gemma":0.0005249197,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01045589,"about_ca_topic_score_gemma":0.01174898,"domain_scores_codex":[0.9996315,0.00007860696,0.00004185795,0.00007576793,0.0000728849,0.00009935656],"domain_scores_gemma":[0.9992833,0.0001796178,0.0002674817,0.000036088,0.0001463838,0.00008723819],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003147004,0.00006080608,0.9560779,0.0000611082,0.00005596849,0.0004923498,0.00222894,0.0002401464,0.0270542,0.000104534,0.00008842391,0.01322091],"study_design_scores_gemma":[0.000004910639,0.0001225599,0.9959688,0.00001555061,0.00001815552,0.0008226021,0.001469505,0.0001866234,0.000888148,0.00003174103,0.0004643889,0.000007072319],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995455,0.00007273823,0.00003015162,0.0000191557,0.000001074312,0.000002507587,0.0001147663,6.098321e-7,0.0002135852],"genre_scores_gemma":[0.9992598,0.0001069037,0.0001270196,0.00001863983,0.000005302219,0.000005625106,0.0002880041,9.736573e-7,0.0001877123],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01045589,"threshold_uncertainty_score":0.02079004,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01366430621726794,"score_gpt":0.2588155946575778,"score_spread":0.2451512884403098,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}