{"id":"W3171594358","doi":"10.1099/ijsem.0.004831","title":"Bradyrhizobium septentrionale sp. nov. (sv. septentrionale) and Bradyrhizobium quebecense sp. nov. (sv. septentrionale) associated with legumes native to Canada possess rearranged symbiosis genes and numerous insertion sequences","year":2021,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Bradyrhizobium; Phylogenetic tree; Genetics; Phylogenetics; Gene; Plasmid; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006150918,0.0004023867,0.0008465991,0.0001329729,0.0003328187,0.0001536942,0.0003819123,0.0002240778,0.0001531943],"category_scores_gemma":[0.0004570794,0.0002115057,0.0001560693,0.0003787998,0.0002413151,0.0003326312,0.0002022226,0.0002860924,0.000006720975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005021674,"about_ca_system_score_gemma":0.0004410446,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.01065529,"about_ca_topic_score_gemma":0.04396539,"domain_scores_codex":[0.9967813,0.0005602823,0.001074593,0.0005563298,0.0006001482,0.0004273703],"domain_scores_gemma":[0.9960419,0.001051516,0.000879296,0.00009168129,0.001651413,0.0002841771],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006721584,0.0005141797,0.1391839,0.0007958016,0.003192792,0.0008268756,0.0007675063,0.00001541159,0.8481522,0.0006275904,0.004724415,0.0005272051],"study_design_scores_gemma":[0.007352029,0.002345518,0.8346328,0.0178133,0.001816929,0.06501551,0.01180969,0.0003274748,0.05036756,0.001152179,0.004079172,0.003287853],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9786204,0.01054619,0.00001504851,0.009003181,0.0006410891,0.0004499183,0.0006634761,0.00002491861,0.00003579507],"genre_scores_gemma":[0.9973183,0.0002650014,0.0003543439,0.0009808098,0.0002763688,0.0000219326,0.0003132358,0.000007928842,0.0004621297],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7977846,"threshold_uncertainty_score":0.9959328,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01028553669928785,"score_gpt":0.2006322531415542,"score_spread":0.1903467164422664,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}