{"id":"W3172025065","doi":"10.1101/2021.06.02.446701","title":"Genomic evidence that blind cavefishes are not wrecks of ancient life","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Subterranean biodiversity and taxonomy","field":"Earth and Planetary Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Cave; Biology; Evolutionary biology; Pseudogene; Blindness; Cichlid; Pleistocene; Zoology; Genome; Paleontology; Ecology; Fish <Actinopterygii>; Gene; Genetics; Fishery","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001414279,0.0001830891,0.0001546843,0.001005694,0.000326768,0.0003526463,0.0002072164,0.0003592652,0.002377632],"category_scores_gemma":[0.0005837496,0.0001636706,0.0003075759,0.0006935182,0.0004436502,0.0001890486,0.0004110554,0.0002637765,0.0002651294],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001512982,"about_ca_system_score_gemma":0.0001549952,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003119973,"about_ca_topic_score_gemma":0.006028226,"domain_scores_codex":[0.9998764,0.000007593881,0.000008455638,0.00006345038,0.00002281971,0.00002132928],"domain_scores_gemma":[0.9993937,0.000144659,0.0002190726,0.00006327319,0.00008205129,0.0000971315],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000440418,0.00002327333,0.5251433,0.0001665933,0.0001689117,0.0009229541,0.0006105182,0.0002260404,0.460857,0.0004308969,0.0001957145,0.01081449],"study_design_scores_gemma":[0.000006664366,0.00005160976,0.9956158,0.00001213046,0.00003864327,0.0004459053,0.0001608784,0.0001979099,0.002499838,0.00009987652,0.0008629797,0.000007881148],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985034,0.000163383,0.000515943,0.0000170748,0.000004895742,0.000002329962,0.0003550201,0.00001505447,0.0004229734],"genre_scores_gemma":[0.9984133,0.00007691087,0.0004692076,0.00003724011,0.000003985867,0.000004177978,0.0006247475,0.000006082024,0.0003644691],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003119973,"threshold_uncertainty_score":0.007953942,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08591833067827746,"score_gpt":0.2054591686707774,"score_spread":0.1195408379924999,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}