{"id":"W3173043721","doi":"10.1101/2021.06.10.447854","title":"MGEnrichment: a web application for microglia gene list enrichment analysis","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Neuroinflammation and Neurodegeneration Mechanisms","field":"Neuroscience","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Hospital for Sick Children","keywords":"Upload; Autism; Microglia; Computational biology; Autism spectrum disorder; Gene; Gene expression; Computer science; Documentation; Biology; Bioinformatics; Data science; World Wide Web; Genetics; Psychology; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002002707,0.002796321,0.001746535,0.004287872,0.001040931,0.002512255,0.002374571,0.001247477,0.09056956],"category_scores_gemma":[0.005165927,0.001334825,0.002065117,0.002716876,0.0005277165,0.00182307,0.004000932,0.001630647,0.03792098],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001061189,"about_ca_system_score_gemma":0.00143067,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003895013,"about_ca_topic_score_gemma":0.006830334,"domain_scores_codex":[0.9988831,0.0001376683,0.000101217,0.0003499342,0.0004167088,0.0001113189],"domain_scores_gemma":[0.9984868,0.0007986993,0.0001662609,0.0002490972,0.0001833806,0.0001157675],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002386726,0.0002979836,0.007576335,0.00355324,0.00116559,0.001241822,0.0007947848,0.003484657,0.02016737,0.004262132,0.7821731,0.1728962],"study_design_scores_gemma":[0.001862858,0.0003980573,0.03688109,0.000993576,0.0005787514,0.001948477,0.000461717,0.08119718,0.05115169,0.03895194,0.7849157,0.0006590354],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.009117944,0.001644346,0.09254062,0.000583781,0.0003381009,0.0005856781,0.1317186,0.7547773,0.008693644],"genre_scores_gemma":[0.07422353,0.00231187,0.3922136,0.00280053,0.0003475233,0.005251962,0.3277888,0.1621301,0.0329322],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.09056956,"threshold_uncertainty_score":0.3029854,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01957006738370166,"score_gpt":0.2410131646461127,"score_spread":0.2214430972624111,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}