{"id":"W3173319349","doi":"10.1002/gcc.22979","title":"Targeted <scp>RNA</scp> sequencing in the routine clinical detection of fusion genes in salivary gland tumors","year":2021,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Salivary Gland Tumors Diagnosis and Treatment","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Health Network; Hospital for Sick Children; University of Toronto; SickKids Foundation; Mount Sinai Hospital","funders":"National Cancer Institute","keywords":"Fusion gene; Acinic cell carcinoma; ETV6; Pleomorphic adenoma; Salivary gland; Gene; Salivary duct carcinoma; HMGA2; Cancer research; Adenoid cystic carcinoma; Carcinoma ex pleomorphic adenoma; Fusion transcript; Mucoepidermoid carcinoma; Biology; Carcinoma; Medicine; Pathology; Genetics; Chromosomal translocation; microRNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002435233,0.0002691803,0.0002970214,0.001580275,0.0002555716,0.0006230509,0.0002891289,0.000472412,0.0004406281],"category_scores_gemma":[0.003859827,0.0001943047,0.0001882112,0.0007442654,0.0005083212,0.0002268958,0.000301786,0.0002211959,0.0002555813],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000229904,"about_ca_system_score_gemma":0.0002993756,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009547626,"about_ca_topic_score_gemma":0.001125054,"domain_scores_codex":[0.9987593,0.0003561924,0.0001405108,0.0002415823,0.0004157381,0.00008674987],"domain_scores_gemma":[0.9983435,0.0008307377,0.0002840064,0.0001374774,0.0002922832,0.0001120632],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007430695,0.00007146284,0.7621793,0.0001097419,0.00008053779,0.004288542,0.0005678824,0.001132287,0.1928679,0.0001950574,0.0005686609,0.03719559],"study_design_scores_gemma":[0.00006354407,0.001381102,0.8200489,0.00008510049,0.0002388013,0.02421038,0.0009133559,0.01273878,0.1324891,0.0005443858,0.007249884,0.00003675499],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927838,0.001300064,0.00422697,0.00007645132,0.00001456776,0.0000643789,0.0002836713,0.00007112129,0.001179047],"genre_scores_gemma":[0.9957337,0.0003705923,0.003375775,0.00006841951,0.00001727859,0.00004361977,0.0002521459,0.00001422255,0.0001241781],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002435233,"threshold_uncertainty_score":0.01287889,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03274078284423314,"score_gpt":0.3088692028925676,"score_spread":0.2761284200483344,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}