{"id":"W3173784737","doi":"10.1371/journal.pcbi.1009072","title":"Examining the dynamics of Epstein-Barr virus shedding in the tonsils and the impact of HIV-1 coinfection on daily saliva viral loads","year":2021,"lang":"en","type":"article","venue":"PLoS Computational Biology","topic":"Viral-associated cancers and disorders","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; BC Children's Hospital; University of British Columbia","funders":"Fogarty International Center; National Institute of Allergy and Infectious Diseases; Fred Hutchinson Cancer Research Center; Natural Sciences and Engineering Research Council of Canada; Compute Canada; Canadian Institutes of Health Research; Emory University; National Cancer Institute; National Institutes of Health; Western Canada Research Grid; Doris Duke Charitable Foundation; Foundation for the National Institutes of Health","keywords":"Coinfection; Saliva; Viral load; Immunology; Immune system; Virus; Epstein–Barr virus; Viral shedding; Cohort; Virology; Biology; Medicine; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000339156,0.00008954433,0.0002454304,0.00005560939,0.00007037597,0.000008505445,0.00006546203,0.00008544715,0.00002426526],"category_scores_gemma":[0.0002831046,0.00004413641,0.00007675713,0.0001953125,0.0002450515,0.00002073075,0.00002720824,0.0002169487,0.000001530314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008943253,"about_ca_system_score_gemma":0.0001434174,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003394697,"about_ca_topic_score_gemma":0.00006951643,"domain_scores_codex":[0.9990885,0.0002940839,0.0002431144,0.0001338497,0.0001212434,0.0001192075],"domain_scores_gemma":[0.9984995,0.001135383,0.0001457528,0.0001095104,0.00009425773,0.00001556215],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003528556,0.001137754,0.6718075,0.0001416457,0.001520875,0.00002943398,0.01004442,0.1486885,0.02464967,0.1210276,0.001116593,0.01630752],"study_design_scores_gemma":[0.008322523,0.001634077,0.7176501,0.0001513247,0.0001783223,0.00006477956,0.003645409,0.2466752,0.0007581413,0.02073963,0.0000179506,0.0001625879],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956973,0.0003573956,0.0004144765,0.001869238,0.00004402981,0.0001956129,0.00004645147,0.000006654353,0.001368799],"genre_scores_gemma":[0.9991397,0.00005033731,0.00006329733,0.0005497433,0.00003309128,0.00001013905,0.0001368133,0.000005963404,0.0000108874],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1002879,"threshold_uncertainty_score":0.1799831,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02023523959416917,"score_gpt":0.2911518001852256,"score_spread":0.2709165605910564,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}