{"id":"W3173961085","doi":"10.1038/s41598-021-00779-5","title":"High-throughput sequencing for species authentication and contamination detection of 63 cell lines","year":2021,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Animal Disease Management and Epidemiology","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Metagenomics; Cell culture; Biology; Cytochrome c oxidase subunit I; Computational biology; Genome; DNA sequencing; Contamination; Virology; Gene; Genetics; Mitochondrial DNA; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001641416,0.0008362134,0.000994683,0.001853841,0.0009597656,0.0008799562,0.0004967724,0.0007237169,0.001884914],"category_scores_gemma":[0.003623531,0.0003910657,0.001425315,0.001944981,0.000405753,0.0004075115,0.0007975716,0.0009486281,0.002051978],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005128884,"about_ca_system_score_gemma":0.0008888312,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003238279,"about_ca_topic_score_gemma":0.008733566,"domain_scores_codex":[0.9980426,0.0003339322,0.0001984259,0.0003992507,0.0008259552,0.0001997838],"domain_scores_gemma":[0.9980129,0.0004253173,0.0002834805,0.0004238669,0.0007203143,0.0001340645],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001496348,0.00006594857,0.003955924,0.000129322,0.00005330745,0.0001278064,0.0002951424,0.0003144782,0.9834167,0.0001677094,0.0005139206,0.01081014],"study_design_scores_gemma":[0.0001149109,0.001231985,0.108066,0.0001754047,0.0004843847,0.000897565,0.000641273,0.01367523,0.8199884,0.001045131,0.05356083,0.0001188017],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6550008,0.002167346,0.2897444,0.0004864594,0.0003010475,0.002768244,0.03791641,0.003094444,0.008520846],"genre_scores_gemma":[0.5532088,0.002639291,0.3542665,0.0007845465,0.0001271177,0.003140833,0.07821653,0.0012227,0.006393614],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003238279,"threshold_uncertainty_score":0.008680761,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03589764645640285,"score_gpt":0.2361284422489048,"score_spread":0.200230795792502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}