{"id":"W3174992442","doi":"10.1093/bioinformatics/btab459","title":"JBrowseR: an R interface to the JBrowse 2 genome browser","year":2021,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Human Genome Research Institute; National Institutes of Health","keywords":"Genome browser; Computer science; Interface (matter); Web browser; Variety (cybernetics); Visualization; Download; World Wide Web; Source code; Genome; User interface; Software; Code (set theory); The Internet; Genomics; Operating system; Biology; Programming language; Set (abstract data type); Genetics; Data mining","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009990091,0.003632123,0.003724636,0.005237835,0.001456953,0.00461027,0.007731568,0.002594525,0.1365757],"category_scores_gemma":[0.03146547,0.004118872,0.002975113,0.00439368,0.001451058,0.004794787,0.005880542,0.00586847,0.2196322],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008169413,"about_ca_system_score_gemma":0.004058767,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004454178,"about_ca_topic_score_gemma":0.003638805,"domain_scores_codex":[0.9930229,0.002601534,0.0007077756,0.001464671,0.001752285,0.0004506825],"domain_scores_gemma":[0.9881742,0.005269771,0.001576775,0.002459896,0.001778641,0.0007407426],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006700961,0.00006268123,0.00225024,0.002629623,0.0005303748,0.0003508728,0.0003472925,0.002077969,0.01041277,0.007856626,0.930541,0.04227044],"study_design_scores_gemma":[0.0005218611,0.00006969451,0.003367036,0.0009468638,0.0002484735,0.001106862,0.0001275015,0.009845451,0.01466469,0.02513372,0.9435607,0.0004072315],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.002116658,0.002251224,0.3452463,0.001730894,0.000738033,0.0004277991,0.1746144,0.4630027,0.009871902],"genre_scores_gemma":[0.0158648,0.002166702,0.4903882,0.001801901,0.0003875637,0.00255397,0.1793226,0.2955524,0.01196192],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.1365757,"threshold_uncertainty_score":0.4568912,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01320621129648441,"score_gpt":0.2460707830635001,"score_spread":0.2328645717670157,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}