{"id":"W3175316794","doi":"10.1093/ajcp/aqab047","title":"Gene Expression Profiling of Muscle-Invasive Bladder Cancer With Secondary Variant Histology","year":2021,"lang":"en","type":"article","venue":"American Journal of Clinical Pathology","topic":"Bladder and Urothelial Cancer Treatments","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Decipher Biosciences (Canada)","funders":"Decipher Biosciences","keywords":"Bladder cancer; Pathology; Cohort; Histology; Biology; Immunohistochemistry; Carcinoma; Subtyping; Cancer; Oncology; Medicine; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004377626,0.0001666267,0.001365802,0.0000914484,0.00003381705,0.00000298328,0.000114227,0.0001222207,0.0004889565],"category_scores_gemma":[0.0004907596,0.0001125748,0.0002876559,0.0001971786,0.0007366015,0.00005510963,0.00004757149,0.0006215962,0.000003956637],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004602488,"about_ca_system_score_gemma":0.002441298,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003222284,"about_ca_topic_score_gemma":0.00002398176,"domain_scores_codex":[0.9975175,0.0004822155,0.001200309,0.0003041074,0.0002476889,0.0002482228],"domain_scores_gemma":[0.9969367,0.0005546177,0.001294704,0.000300675,0.0006673484,0.0002459746],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.008800318,0.002610238,0.3667569,0.0001594171,0.001943976,0.03948134,0.001148585,0.00005923114,0.2413128,0.00007085245,0.001071358,0.336585],"study_design_scores_gemma":[0.02115007,0.03162335,0.5562951,0.0008684418,0.002682239,0.02770827,0.002468107,0.00001000883,0.3528736,0.0005302129,0.00327478,0.0005158158],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993252,0.001854521,0.001494384,0.001679972,0.0006289083,0.0001219045,0.00002928314,0.000008099897,0.0009309701],"genre_scores_gemma":[0.9621153,0.001315755,0.0337104,0.002210716,0.0004953413,0.000008714112,0.000007557613,0.00002848411,0.0001076542],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3360692,"threshold_uncertainty_score":0.535373,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03807308881717943,"score_gpt":0.36868202340139,"score_spread":0.3306089345842106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}