{"id":"W3175504699","doi":"10.2196/28049","title":"Emergence of the First Strains of SARS-CoV-2 Lineage B.1.1.7 in Romania: Genomic Analysis","year":2021,"lang":"en","type":"article","venue":"JMIRx Med","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Unitatea Executiva pentru Finantarea Invatamantului Superior, a Cercetarii, Dezvoltarii si Inovarii","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Biology; Lineage (genetic); Infectivity; Genetics; Virology; Virulence; Sequence analysis; Mutation; Amino acid substitution; Pandemic; Coronavirus disease 2019 (COVID-19); Genome; Spike Protein; Gene; Virus; Medicine","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000375452,0.0001353786,0.000532096,0.000273116,0.00004378508,0.000006953149,0.0003077182,0.0001094256,0.0001079985],"category_scores_gemma":[0.0003512822,0.0001015627,0.0003450888,0.002497352,0.0001338942,0.00003736543,0.0001602267,0.0002662319,0.00001554108],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005170278,"about_ca_system_score_gemma":0.0003659968,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005263768,"about_ca_topic_score_gemma":0.00549101,"domain_scores_codex":[0.998305,0.00008509595,0.0005154238,0.0003050872,0.0005089958,0.0002803774],"domain_scores_gemma":[0.9987858,0.00008977006,0.0001357688,0.0007453325,0.0002222845,0.00002105662],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007168374,0.0003056263,0.1840238,0.0001839963,0.0003817404,0.00008533862,0.0009361337,0.000004727427,0.812556,0.0001017271,0.001029887,0.0003193191],"study_design_scores_gemma":[0.0009238214,0.00006762272,0.2769603,0.00006262228,0.0002546745,0.000005762489,0.000409265,0.001153525,0.7040852,0.00002721009,0.0159586,0.00009135498],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938981,0.0003977198,0.00004524885,0.00164709,0.00007750824,0.0002994704,0.00002314155,0.0000125541,0.003599153],"genre_scores_gemma":[0.996244,0.00001386853,0.0001057136,0.003310107,0.00005244564,0.00002555747,0.000005139389,0.0000165529,0.0002266347],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1084709,"threshold_uncertainty_score":0.4141606,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05512750938735006,"score_gpt":0.363175503139691,"score_spread":0.308047993752341,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}