{"id":"W3175774021","doi":"10.1101/2021.06.18.448947","title":"Genomic islands targeting <i>dusA</i> in <i>Vibrio</i> species are distantly related to <i>Salmonella</i> Genomic Island 1 and mobilizable by IncC conjugative plasmids","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Genomic island; Biology; Plasmid; Genetics; Gene; Vibrio cholerae; Extrachromosomal DNA; Salmonella; Genome; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007411503,0.0001868114,0.0001420377,0.0003619637,0.0001108497,0.0002174944,0.0001539703,0.0001919789,0.0005669262],"category_scores_gemma":[0.0001594808,0.0001795023,0.0002263627,0.0002112745,0.0001920329,0.00009131105,0.0002723246,0.0002808558,0.0002316056],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003016755,"about_ca_system_score_gemma":0.0001665197,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001485768,"about_ca_topic_score_gemma":0.001812315,"domain_scores_codex":[0.9999083,0.000006181585,0.000005582643,0.00003456724,0.00001727736,0.00002804177],"domain_scores_gemma":[0.9998212,0.00002736457,0.00006691089,0.00001907457,0.00002163645,0.00004378972],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003780203,0.000005804453,0.001279032,0.0000162701,0.000002459819,0.00001722496,0.00002373215,0.00002338824,0.9979838,0.00002874132,0.00000758815,0.0005741083],"study_design_scores_gemma":[0.00001984028,0.0004952003,0.2930611,0.00003327049,0.00006043836,0.001063009,0.0003331135,0.001075335,0.6996007,0.0001332891,0.004104803,0.0000198509],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978612,0.0002132981,0.001063849,0.00001698618,0.000004711789,0.00001417901,0.0002917717,0.00002682545,0.0005071434],"genre_scores_gemma":[0.9963608,0.00008269089,0.001387994,0.00002288738,0.000002742947,0.00001514243,0.001442768,0.00001340776,0.0006714971],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001485768,"threshold_uncertainty_score":0.002954245,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005382306082493411,"score_gpt":0.1964896028089557,"score_spread":0.1911072967264623,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}