{"id":"W3176055576","doi":"10.1128/aem.00641-21","title":"Borrelia afzelii Infection in the Rodent Host Has Dramatic Effects on the Bacterial Microbiome of Ixodes ricinus Ticks","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Borrelia afzelii; Ixodes ricinus; Biology; Microbiome; Ricinus; Nymph; Tick; Microbiology; Borrelia; Ixodes; Larva; Zoology; Borrelia burgdorferi; Virology; Ecology; Immunology; Genetics; Botany; Antibody","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001176551,0.0002320167,0.0001804497,0.0002083927,0.000227365,0.00034006,0.00005911371,0.0001580311,0.001343555],"category_scores_gemma":[0.000154971,0.00008657201,0.0001104543,0.0001142715,0.0001842429,0.0001269551,0.0002229639,0.0002481402,0.0002303991],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001226637,"about_ca_system_score_gemma":0.0001356833,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006662678,"about_ca_topic_score_gemma":0.001579442,"domain_scores_codex":[0.9998592,0.00003674622,0.000005377597,0.00002421723,0.00001754475,0.00005693983],"domain_scores_gemma":[0.9998897,0.000007648144,0.00004006576,0.000006278508,0.0000129647,0.0000433358],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001064876,0.0002137662,0.06909004,0.000147265,0.00006764704,0.0003777774,0.0002549712,0.00006563807,0.9103149,0.0001081856,0.0004737641,0.01782125],"study_design_scores_gemma":[0.00002372934,0.00134204,0.9534922,0.00002890837,0.0000537658,0.0008303932,0.000820443,0.0001576481,0.03952121,0.0001254539,0.003591246,0.00001302733],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99726,0.00139881,0.0001163883,0.00008450278,0.00001628146,0.000005722367,0.0001314735,0.00000918558,0.0009775743],"genre_scores_gemma":[0.9980763,0.0009106226,0.0002381142,0.00007062538,0.00001226994,0.000006162603,0.0001459289,0.00000274267,0.0005372022],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001343555,"threshold_uncertainty_score":0.004494607,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007857140381861973,"score_gpt":0.166443286762778,"score_spread":0.1585861463809161,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}