{"id":"W3176649519","doi":"10.1016/j.rbmo.2021.06.021","title":"Assessing the testicular sperm microbiome: a low-biomass site with abundant contamination","year":2021,"lang":"en","type":"article","venue":"Reproductive BioMedicine Online","topic":"Sperm and Testicular Function","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"Children's Hospital of Eastern Ontario","funders":"Consejería de Conocimiento, Investigación y Universidad, Junta de Andalucía; European Society of Human Reproduction and Embryology; Ministerio de Educación, Cultura y Deporte; Junta de Andalucía; Ministerio de Asuntos Económicos y Transformación Digital, Gobierno de España; Universidad de Granada; Ministerio de Economía y Competitividad; European Regional Development Fund; Federación Española de Enfermedades Raras; Ministerio de Ciencia, Innovación y Universidades","keywords":"Microbiome; Biology; Sperm; Clostridium; Contamination; Metagenomics; Andrology; Microbiology; Physiology; Bacteria; Ecology; Bioinformatics; Medicine; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005380858,0.0003045656,0.000470575,0.0002089028,0.0002014277,0.00006598791,0.00008239219,0.0001003095,0.0001380986],"category_scores_gemma":[0.001344907,0.0001761367,0.0001022504,0.001530078,0.0004791416,0.0001980031,0.00006328955,0.0003084946,0.00003684262],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000221415,"about_ca_system_score_gemma":0.0004248777,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007794629,"about_ca_topic_score_gemma":0.00002104066,"domain_scores_codex":[0.9976565,0.0001096405,0.0004079521,0.0009253518,0.000550944,0.0003496501],"domain_scores_gemma":[0.9972979,0.0001475784,0.0002084881,0.0009914027,0.001202709,0.0001518868],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001470877,0.001133951,0.02647231,0.0002246623,0.0002894322,0.001338767,0.0003897451,0.000003972275,0.961099,0.00005818071,0.0006771648,0.008165754],"study_design_scores_gemma":[0.005392989,0.001187881,0.7720935,0.001332322,0.001309835,0.01051387,0.002641516,0.0009418977,0.1807725,0.00005570591,0.02330483,0.0004531737],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9763332,0.002192741,0.003090797,0.01669785,0.00054455,0.0006155429,0.00002863247,0.0001431576,0.0003535383],"genre_scores_gemma":[0.989531,0.00005847326,0.004401823,0.000868407,0.002230003,0.00001908133,0.001473399,0.000057563,0.001360216],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7803265,"threshold_uncertainty_score":0.7182646,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01715771597034316,"score_gpt":0.2962922713165478,"score_spread":0.2791345553462047,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}