{"id":"W3177280576","doi":"10.1007/s13225-021-00475-9","title":"The evolving species concepts used for yeasts: from phenotypes and genomes to speciation networks","year":2021,"lang":"en","type":"review","venue":"Fungal Diversity","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"National Institute of Allergy and Infectious Diseases; Biotechnology and Biological Sciences Research Council; Agricultural Research Service; National Institutes of Health; Canadian Institute for Advanced Research; Deutsche Forschungsgemeinschaft; U.S. Department of Agriculture","keywords":"Biology; Genetic algorithm; Phenotype; Evolutionary biology; Genome; Biodiversity; Computational biology; Genetics; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001209397,0.001729945,0.002174406,0.005183749,0.0005320333,0.001972993,0.001694678,0.001809767,0.002086101],"category_scores_gemma":[0.001810599,0.0004972286,0.0008487562,0.00442268,0.002343457,0.004068627,0.001283074,0.003260482,0.001606647],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001981324,"about_ca_system_score_gemma":0.001525375,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002697024,"about_ca_topic_score_gemma":0.002135953,"domain_scores_codex":[0.9995523,0.00009620302,0.0000665698,0.0001190427,0.0001397598,0.00002609896],"domain_scores_gemma":[0.9991199,0.0005198419,0.00009227701,0.00003460415,0.0001768574,0.00005638726],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0000574303,0.00005223058,0.0003081094,0.03180909,0.0001529923,0.0002894951,0.0003629721,0.001397382,0.002374029,0.04412572,0.02684857,0.8922219],"study_design_scores_gemma":[0.000007004148,0.0000544674,0.0005846367,0.00410694,0.00008580168,0.000932938,0.0001456556,0.0001800827,0.0005529818,0.01228218,0.9810204,0.000046989],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0000805446,0.9972185,0.001023633,0.0004058869,0.000366738,0.000006976709,0.00002269844,0.00001637412,0.0008586461],"genre_scores_gemma":[0.0008397225,0.9966301,0.001197834,0.0004382237,0.000304554,0.00001726431,0.0000486459,0.00000730964,0.0005163394],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.005183749,"threshold_uncertainty_score":0.01437551,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02983818523899668,"score_gpt":0.279725069336298,"score_spread":0.2498868840973014,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}