{"id":"W3177326348","doi":"10.20517/jtgg.2021.08","title":"Genome-wide homozygosity and risk of four non-Hodgkin lymphoma subtypes","year":2021,"lang":"en","type":"article","venue":"Journal of Translational Genetics and Genomics","topic":"Chronic Lymphocytic Leukemia Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Division of Cancer Epidemiology and Genetics, National Cancer Institute; Kræftens Bekæmpelse; National Human Genome Research Institute; Deutsche Krebshilfe; National Center for Chronic Disease Prevention and Health Promotion; National Heart, Lung, and Blood Institute; National Institute on Aging; BC Cancer Agency; World Cancer Research Fund; National Center for Advancing Translational Sciences; Medical Research Council; Institut National Du Cancer; Centers for Disease Control and Prevention; National Institutes of Health; National Institute of Environmental Health Sciences; Hellenic Health Foundation; Cancer Research UK; Blood Cancer UK; Institut Gustave-Roussy; Associazione Italiana per la Ricerca sul Cancro; Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail; NordForsk; Vetenskapsrådet; Canadian Institutes of Health Research; MedStar Health Research Institute; Cancerfonden; Michael Smith Health Research BC; Centres de Recerca de Catalunya; Institut National de la Santé et de la Recherche Médicale; U.S. Department of Health and Human Services; Frederick National Laboratory for Cancer Research; Generalitat de Catalunya; Fondation de France; Deutsches Krebsforschungszentrum; Ligue Contre le Cancer; European Regional Development Fund; Bundesministerium für Bildung und Forschung; Ministerio de Economía y Competitividad; University of Pittsburgh; World Health Organization; National Cancer Institute; Ohio State University; Instituto de Salud Carlos III; Wake Forest University; American Cancer Society; Brigham and Women's Hospital; University at Buffalo; European Commission","keywords":"Lymphoma; Genome; Runs of Homozygosity; Genetics; Biology; Hodgkin lymphoma; Medicine; Genotype; Single-nucleotide polymorphism; Gene; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004037558,0.000106685,0.0003314877,0.0001047537,0.00006040858,0.00002225111,0.00006696177,0.00008926643,0.00002796969],"category_scores_gemma":[0.00006896428,0.00009568286,0.0001145703,0.0001067422,0.0001174462,0.00003522022,0.00003373913,0.0001339691,9.284008e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003063616,"about_ca_system_score_gemma":0.003168577,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001983052,"about_ca_topic_score_gemma":0.00003242059,"domain_scores_codex":[0.9988526,0.00004474277,0.0004655083,0.0001392807,0.0003462847,0.000151593],"domain_scores_gemma":[0.9988223,0.0002226929,0.0002113514,0.0001332874,0.0004273887,0.0001830147],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00297429,0.0007566861,0.7494493,0.001115923,0.003082266,0.001234272,0.004071972,0.008645097,0.1236159,0.0002758421,0.0002160069,0.1045625],"study_design_scores_gemma":[0.01173456,0.0003936233,0.9571092,0.00006521745,0.0004647558,0.002401733,0.0001085864,0.009108804,0.01149577,0.001708143,0.005270628,0.0001389764],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9843198,0.01239784,0.002480586,0.0004228317,0.00006029707,0.00009396036,0.00003670994,0.000001450228,0.000186535],"genre_scores_gemma":[0.9637893,0.01998426,0.01586838,0.00005543827,0.0001873651,4.636098e-7,0.000007587617,0.00001566669,0.00009147974],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2076599,"threshold_uncertainty_score":0.5620919,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01634754712487878,"score_gpt":0.2604938279321859,"score_spread":0.2441462808073071,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}