{"id":"W3177377829","doi":"10.1101/2021.07.01.450585","title":"Temporal Gene Expression in Apical Culms Shows Early Changes in Cell Wall Biosynthesis Genes in Sugarcane","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Sugarcane Cultivation and Processing","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Sucrose synthase; Gene; Sucrose; Biology; Cell wall; Plant stem; Biosynthesis; Sucrose-phosphate synthase; Gene expression; Secondary cell wall; Sugar; Genotype; Biochemistry; Secondary metabolism; Botany; Invertase","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007202673,0.0005024064,0.0006569752,0.0001969767,0.00009367501,0.0002880305,0.0005869645,0.0007208015,0.0003061923],"category_scores_gemma":[0.0001591406,0.0002879091,0.0001086087,0.001142152,0.00007545884,0.0001830205,0.0004373999,0.0007496364,0.00001115657],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002371397,"about_ca_system_score_gemma":0.0001527086,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001644104,"about_ca_topic_score_gemma":0.003834096,"domain_scores_codex":[0.9967299,0.0003976163,0.0006351859,0.001165365,0.0004061956,0.0006657868],"domain_scores_gemma":[0.9989151,0.0001736297,0.0002867242,0.0002593863,0.0001621146,0.0002030808],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002645346,0.0001802582,0.2994818,0.00008222989,0.000003567711,0.00008988132,0.00004216505,0.00001465745,0.700007,0.000002138717,0.000006605298,0.00006324709],"study_design_scores_gemma":[0.000194988,0.00002475424,0.4844122,0.0004421849,0.000004509136,1.281451e-8,0.00003827209,0.0000911587,0.5139683,8.495401e-7,0.000421149,0.0004015873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961286,0.002065735,0.000005478214,0.0009108911,0.0002570411,0.0004615852,0.00005737398,0.0001049899,0.000008303313],"genre_scores_gemma":[0.9971445,0.0005068724,0.00164202,0.0002402212,0.0002622634,0.0001794806,0.000003831634,0.00001235445,0.000008417259],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1860386,"threshold_uncertainty_score":0.9999573,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02624408805149384,"score_gpt":0.2128860387982733,"score_spread":0.1866419507467795,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}