{"id":"W3177579230","doi":"10.1186/s42523-021-00105-4","title":"Shades of grey: host phenotype dependent effect of urbanization on the bacterial microbiome of a wild mammal","year":2021,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; University of Waterloo; American Society of Mammalogists; University of Windsor; University of Guelph","keywords":"Mammal; Phenotype; Host (biology); Microbiome; Biology; Urbanization; Zoology; Ecology; Evolutionary biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002508179,0.0001972432,0.0003435739,0.00007322683,0.00005607535,0.00001263695,0.0002358115,0.0001936395,0.0001453971],"category_scores_gemma":[0.00007301616,0.0001522982,0.000155007,0.0002525443,0.0001711686,0.000004999728,0.0001591422,0.00008791544,0.00001122884],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001863501,"about_ca_system_score_gemma":0.0001579149,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004830054,"about_ca_topic_score_gemma":0.0000300676,"domain_scores_codex":[0.9987622,0.0001738569,0.0004190188,0.0003223118,0.00008246021,0.0002400837],"domain_scores_gemma":[0.9990422,0.00004274845,0.0002813934,0.0003788341,0.0002140212,0.0000408558],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007931314,0.0001518281,0.001968907,0.0002508513,0.0001019995,0.000002561306,0.0000672775,0.000001014055,0.9953863,0.0001560537,0.001024887,0.00009518043],"study_design_scores_gemma":[0.000827272,0.001672624,0.01221034,0.00008875226,0.00005330361,0.00002908462,0.00002678081,7.149472e-7,0.9828912,0.000003756032,0.002062468,0.0001336963],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983419,0.000535857,0.00002345734,0.0001631665,0.0001584141,0.0002621893,0.0003682511,0.000005087565,0.0001417134],"genre_scores_gemma":[0.998939,0.00006804424,0.0001457148,0.0001005592,0.0001230294,0.000003920619,0.0004162663,0.00002788135,0.0001755867],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0124951,"threshold_uncertainty_score":0.6210542,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006747536547061396,"score_gpt":0.2307029817713068,"score_spread":0.2239554452242454,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}