{"id":"W3177579230","doi":"10.1186/s42523-021-00105-4","title":"Shades of grey: host phenotype dependent effect of urbanization on the bacterial microbiome of a wild mammal","year":2021,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; University of Waterloo; American Society of Mammalogists; University of Windsor; University of Guelph","keywords":"Mammal; Phenotype; Host (biology); Microbiome; Biology; Urbanization; Zoology; Ecology; Evolutionary biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000242353,0.0001697048,0.0001871712,0.0002325158,0.0002699165,0.000461598,0.0001149716,0.0002277454,0.001722505],"category_scores_gemma":[0.0005421307,0.0001294111,0.0002536265,0.0001732092,0.0005428334,0.0002262276,0.0004662768,0.000407831,0.0001437033],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002472293,"about_ca_system_score_gemma":0.0001394107,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002434324,"about_ca_topic_score_gemma":0.006887781,"domain_scores_codex":[0.9997521,0.00006648494,0.00001008373,0.00008680737,0.0000420856,0.00004237364],"domain_scores_gemma":[0.9994261,0.0001281005,0.0002041769,0.00004881378,0.00005203996,0.0001407361],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003088868,0.000225426,0.7017683,0.00007181532,0.000250506,0.0002553522,0.0009015299,0.0002997901,0.2864471,0.0001405073,0.0003726028,0.006178176],"study_design_scores_gemma":[0.000002209846,0.000198091,0.9979823,0.000002544703,0.00001862968,0.00005080988,0.0002212216,0.0001012548,0.001290306,0.00002535289,0.0001036312,0.000003762586],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995747,0.00004881229,0.00007311377,0.00001798158,0.000002995489,0.000002437434,0.0001063032,0.000002896347,0.0001708011],"genre_scores_gemma":[0.9996098,0.00001795729,0.0001164767,0.00002534602,0.000002420415,0.000004457735,0.0001000079,0.000003178134,0.0001204688],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002434324,"threshold_uncertainty_score":0.005762398,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006747536547061396,"score_gpt":0.2307029817713068,"score_spread":0.2239554452242454,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}